Sbul004847.1
Basic Information
- Insect
- Sarcophaga bullata
- Gene Symbol
- retn_1
- Assembly
- GCA_005959815.1
- Location
- QOCX01000143.1:95304-170012[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.8e-26 7.1e-23 80.6 0.0 2 89 263 348 262 348 0.96 2 3 1.8 4.5e+03 -2.1 1.0 52 76 464 489 446 506 0.66 3 3 2.5 6.3e+03 -2.6 0.4 12 27 499 514 485 536 0.46
Sequence Information
- Coding Sequence
- ATGCAACTCAACACAATGGACTGCACCGGACGTTCGAATTTAAATGAACGAGATTCGGAGTTGGGTGACGATATGTCACACGATGATCATTCAGATGATGAAATGCGTGAATGTGATTCGGTTGAAGAGGATCACATATCCAGAATAGGATCACGTTTAAACACGTCAATAACGAGTAATAGCGCTGTAACTGCTGGTGACATTAACGGATCTGATCATATAAACGATATATCCATGAGTagccatcatcatcaatttCCACCAAATCATCCGTTAAACGCTTTGGGTAATTTTATGGGAATCGGTAGTTTACATGGGATACCAAATTTGCAGCACAACGATGTACTCGAAAAACTTAAGATGCAAGTACGTGATATGAAAGTCGGATTAATGGATCAGGAATATGCTGCGGCACATGCAGCTGCCTTTGGGCCGGGTGTTTTACCAAATTCTATTAATTCAGCTTTCACACTTCCACCCTCCACAATGGCATCGTTTACTCACGCAGCACAAACTTTGGCTGTACAAGCGGGCAATAACATGAATTCACATTTAAACCCCAGCTCTACGTCGGGATCGATGGGAAGTTCTTCAGTGCAAAACGGCAGtcacaatacattttcatttacctCGCCGACAGCTCCAAATACAAAAGACGtaaATCCTGCCTCGAATTCATCAACATCGAGTGAAACATCCAATTCTTCTCAACAAAATAACGGCTGGAGTTTTGAAGAGCAATACAAACAAGTTCGACAGtTATACGAAATCAACGATGATCCCAAACGTAAAGAGTTCCTGgatgatttgttttcatttatgcaAAAGAGGGGCACACCCATCAATCGTCTACCAATTATGGCCAAATCAGTTTTGGATCTCTATGAACTGTATAATTTAGTTATTGCTCGGGGAGGACTCGTAGATGTCATTAACAAAAAGTTATGGCAGGAGATCATTAAGGGACTGCATCTACCATCGAGCATAACAAGTGCAGCCTTCACTCTTCGAACTCAaTATATGAAGTATTTGTATCCGTAtgaatgtgagaaaaaaaatcttagtaCACCAGCTGAATTGCAGGCTGCCATTGATGGTAATCGTCGTGAGGGTCGACGTTCCAGTTATGGTCAATATGAGGCAATGCATGGCCAAATGCAAATGccTCAGATAACGCGTCAGTCACTGACGGGTGGTATGCAGCAAATATCACCTTTAGCTTTGGTTACACATGCAGCTGCTGCCAATAATCAGCAGGCTCAAGCTGCAGTTGCTGCTGCAGCGGCTCATCATAGACTAATGAAGCCCTCATTTGTTCCAAATTTGGTTACGCAAGAAATTGAACAGCGAatgattgaatatttaaagttaattcaAGTTAAAAAGGAACAGAATGTCATTAATAATGTTTCTGGTTCTATGGGTTTATCGCcccaccaacaacaaaatcatcaacagcatcaacagacgcaacaacaacaacaacagcatcagcagcaccaacaacaacagcatcagagACCGCAAAGTCCCGAAATAAGTACAAGAGAAGCATTAAATGCACTGGAAATGTCACGGGTAGCACTGTGGCAAATGTATCACAACAGTACCAGTCCAGCACCCTCTGTTAGTACTTCACCACATGGTGGCGGAAATGCTAATTTCTCGACGAGTCATGGTATTACAGTCAACGAAACACAACGtagCGAGGCTTTGAACCTATCGGATTCGCCTCCCAATCTCACCACTATTAAACGTGAGCGAGAACGAGAACCCAGTCCTGAAACAAATGAACAAGACGAATTTCACCACCATCAACCACCACCAACCAAACGTGCCAGTTTCTATTTACCTCCTGGAATGGGAGAAGTTTCTGTAGCCGCAGCTGCAACAAATTTTCACTACAAAGGTGACCATCAGTTACATTCTGACGTTGAGGCAGACGAAGagaacgaagaagaagaaggtaaCCATAATACAACAGTCAATATTTCCCACGATGGTACAACTGTACGCCAGCAGTTAAACGGTGAATCAGTAAGAGCACCACGACATCATGGTAGCAGTAGCAGCGTGCATAATGATAAATCAGACGATTCAGCTATTGAAAATTCTCCATCTACATCGGCAGCATCCGCTGGCAATGGTCACATATCACCCGTCTCTACCAAGATAATTCAATTGTCCAAACAAACCCAGCAGCATAACACGGCAAGTTCTAGCGGAACTTGTGCTGAAAATATGACAGCGGTCGGTTCGCCTTCGTTGGGTCCATTCGAAGCATTAAAGCTGTTATCCGGAATGCAATTTCGAGTAACGCGGAAtggCACAAATGCTAATGGCGAACAAGAGTTAGCCGTTAACCTtgaattaaatggaattaaatactCTGGTATACTTGTTGCATATGCCTCGGATCTATCGGCTTCCATGGCGACATCGTCAGCTGATTCGACGGCAATAACAACGTTGTCGACGACTACCATGTCTTTAAGGGATGACAACACCTCCGGCAATAGTAAAAATGAGAACGACTGTAGTAATCGTAAAACAGATAGAGACAGCCCCAACAACATGAACCATAATCCTATCAGTGACGACGAAACTAATAAGGATTTAGCCGTTGCCATGAATGCAATGGAGGATACAGACGAAATGGCAGTGCGTGATAACGTAACATcaccaaatacaaatacaaacagcaTTGTCAACGGAGCCACCGGCAGTGTCAGTTCCACACTTCAAGATGCCCTAATAACATTATAG
- Protein Sequence
- MQLNTMDCTGRSNLNERDSELGDDMSHDDHSDDEMRECDSVEEDHISRIGSRLNTSITSNSAVTAGDINGSDHINDISMSSHHHQFPPNHPLNALGNFMGIGSLHGIPNLQHNDVLEKLKMQVRDMKVGLMDQEYAAAHAAAFGPGVLPNSINSAFTLPPSTMASFTHAAQTLAVQAGNNMNSHLNPSSTSGSMGSSSVQNGSHNTFSFTSPTAPNTKDVNPASNSSTSSETSNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHGQMQMPQITRQSLTGGMQQISPLALVTHAAAANNQQAQAAVAAAAAHHRLMKPSFVPNLVTQEIEQRMIEYLKLIQVKKEQNVINNVSGSMGLSPHQQQNHQQHQQTQQQQQQHQQHQQQQHQRPQSPEISTREALNALEMSRVALWQMYHNSTSPAPSVSTSPHGGGNANFSTSHGITVNETQRSEALNLSDSPPNLTTIKREREREPSPETNEQDEFHHHQPPPTKRASFYLPPGMGEVSVAAAATNFHYKGDHQLHSDVEADEENEEEEGNHNTTVNISHDGTTVRQQLNGESVRAPRHHGSSSSVHNDKSDDSAIENSPSTSAASAGNGHISPVSTKIIQLSKQTQQHNTASSSGTCAENMTAVGSPSLGPFEALKLLSGMQFRVTRNGTNANGEQELAVNLELNGIKYSGILVAYASDLSASMATSSADSTAITTLSTTTMSLRDDNTSGNSKNENDCSNRKTDRDSPNNMNHNPISDDETNKDLAVAMNAMEDTDEMAVRDNVTSPNTNTNSIVNGATGSVSSTLQDALITL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -