Sric001726.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- stc
- Assembly
- None
- Location
- BLXV01000025:3283972-3294913[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.5 1.5e+04 -3.7 1.6 15 19 430 434 429 434 0.81 2 10 0.08 8.1e+02 0.4 0.6 4 10 464 470 463 470 0.93 3 10 9.5e-05 0.97 9.7 16.3 4 19 478 493 476 493 0.93 4 10 3.4e-08 0.00035 20.7 11.1 1 19 529 547 529 547 0.97 5 10 1.9e-05 0.19 12.0 16.0 1 18 588 605 588 606 0.98 6 10 0.00093 9.5 6.5 13.4 1 19 647 669 647 669 0.87 7 10 2 2e+04 -4.7 2.2 6 10 699 703 699 703 0.94 8 10 0.0027 27 5.1 7.7 1 12 709 720 709 720 0.94 9 10 0.071 7.2e+02 0.5 1.0 4 10 724 730 723 730 0.94 10 10 2.9e-07 0.003 17.7 11.6 3 19 738 754 736 754 0.92
Sequence Information
- Coding Sequence
- atgtcccagtggaataactcttacgcttacaatagccaataccaacctggcaacgcctggaatggtgatcctaacaaccaatatttaaatcaagcttattacccaaacaggcaagatccaaatagtcaatatgtaaacttcaatgagtttttaactcaaatacagggtaatagcgcagtttcaggcactacctcgcattttagaaatgctcagtttgaaaattatcctccagcgcaatatagttaccaaaatgtaccctctaatagtcaaaatactctcttagatagttacacatttggacaaagctcatctaatatacctagcaatacggatttgtatcagtcaaatgtccagccccaatatatgttgccaaatcattcttatgcaaatgatttaatattaaattctaatcttacaccaactgcaacagaatttgtgccaaaaggtatgataccacctaccacaaatagccaaaacattgctgaatcacccagtacatttaatgataatactgaacccaggagtaagcatgctagctcatctgatactaattggagagaaagaccacagaactcccagcagaatgatgaagtaactaacaaagactcacatagtcatttacaagagaatcaaaggccacaaagcaatgggcgtaacagagaaagtaaccgtgaaagtcaatcaaatggtcactattatgagacaaataatagaagccatgaaagaaaccaatatgaatctatgaaccatagtaatgatcagaacagtcgaaattatgactccaatgctcgatacgaaaaaagggtccaagtaaaacacaaccccaaatcgaaagccaaagattcagaaatacggacattttataatagttcaatgaataaagacagtcaagatgtgagaaacggaagaggtgagagttctagtaaatctagaaatagagtgggaagtcaacgaattagggccatggatagacacaaagttgaagatgaagaatatgctaataactatctccaacaaaaggaagagaaagtagagaagagtaaatcagagttattttccagcccagccagaaacagaaacaaaaatatggatcaaggtcacaaagaaatgacacaaagagagcgccttacagagcaactggagaaaggttctctagagtgccttgtgtgctgtgaaagagttaagcaaatagatccagtgtggtcgtgtaggaattgttatcatattttacaccttaggtgtatcagaaaatgggcaatcagtagcatggttgagggcaaatggcgatgtccagcatgtcaaaacccgaatgacgacagcttagctgattaccgctgtatgtgcggagcggtccgttcaccggagtaccagcgcggtaccaaccttgcacatacgtgcgggaaggcgtgcaagagaccacgcagctgcccgcacccttgcactttactctgccatcctggcccatgtccagcgtgccaggcaactatcattaagcgatgtggctgtggcgccgagactcgttcggttttatgcagtagtaagttaccgcaagtttgcgggcgcgtgtgcggccgtgcgctggaatgcggcctacacaaatgtgccaaggactgccacgaaggaccttgcgacatctgtactgaaactgtcattcaaatatgctactgcccggcgggtaagtcccagtcggttccgtgtacaaaggagaccagtgggagcaaacattggtcttgcggtggcgagtgcggtcgcgtgctgtcgtgcggcgcgcacgtgtgccgccagccctgccacccgccgccgtgccaaccctgcgtcctgctgccggacactgtgctcacctgtccctgtggcaaaactagtttggagaaaggcaaacgcaaatcttgcacggacccgatcccgttgtgcgggaacatctgtgccaaaccgttaacctgcggaccgccgggagacaaacatttctgcaaagacgattgtcacaatggagcttgtccgggatgtcctgataaaactgtcttgcaatgccgttgcggtcattcgagccgtgaggtagcttgcaccgatctacctcagatgtacaacaatgtactctgtcagaagaaatgtaacaagaaactgtcatgtggtagacaccggtgtagaacattatgttgttcggagaccgtacaccgttgcacattagtatgtgcacgttcgttaccttgccaagcgcatcgatgtgaagagttctgccacactggccgatgtgcaccctgtcccagactcagtttcgaagagttgcgatgcgagtgcggtgcggaagtgatcttgccaccggtggcctgcggcaccaaacccccggcctgcacggccccgtgccgcagacgcggccgtgtggtcacccgccgcaccactcctgccattctgccgaatgtccgccttgcgtcgtgctga
- Protein Sequence
- MSQWNNSYAYNSQYQPGNAWNGDPNNQYLNQAYYPNRQDPNSQYVNFNEFLTQIQGNSAVSGTTSHFRNAQFENYPPAQYSYQNVPSNSQNTLLDSYTFGQSSSNIPSNTDLYQSNVQPQYMLPNHSYANDLILNSNLTPTATEFVPKGMIPPTTNSQNIAESPSTFNDNTEPRSKHASSSDTNWRERPQNSQQNDEVTNKDSHSHLQENQRPQSNGRNRESNRESQSNGHYYETNNRSHERNQYESMNHSNDQNSRNYDSNARYEKRVQVKHNPKSKAKDSEIRTFYNSSMNKDSQDVRNGRGESSSKSRNRVGSQRIRAMDRHKVEDEEYANNYLQQKEEKVEKSKSELFSSPARNRNKNMDQGHKEMTQRERLTEQLEKGSLECLVCCERVKQIDPVWSCRNCYHILHLRCIRKWAISSMVEGKWRCPACQNPNDDSLADYRCMCGAVRSPEYQRGTNLAHTCGKACKRPRSCPHPCTLLCHPGPCPACQATIIKRCGCGAETRSVLCSSKLPQVCGRVCGRALECGLHKCAKDCHEGPCDICTETVIQICYCPAGKSQSVPCTKETSGSKHWSCGGECGRVLSCGAHVCRQPCHPPPCQPCVLLPDTVLTCPCGKTSLEKGKRKSCTDPIPLCGNICAKPLTCGPPGDKHFCKDDCHNGACPGCPDKTVLQCRCGHSSREVACTDLPQMYNNVLCQKKCNKKLSCGRHRCRTLCCSETVHRCTLVCARSLPCQAHRCEEFCHTGRCAPCPRLSFEELRCECGAEVILPPVACGTKPPACTAPCRRRGRVVTRRTTPAILPNVRLASC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -