Sric008883.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- -
- Assembly
- None
- Location
- BLXV01000008:17233236-17241934[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.1 2.7e+02 2.5 0.7 1 23 149 171 149 171 0.96 2 12 1.4e-05 0.00091 19.7 2.5 1 23 177 199 177 199 0.98 3 12 0.77 51 4.8 3.1 1 23 213 235 213 235 0.98 4 12 0.00014 0.0089 16.6 3.3 1 23 473 495 473 495 0.98 5 12 0.00023 0.015 15.9 0.6 2 23 501 523 500 523 0.97 6 12 0.00089 0.058 14.0 5.5 1 23 531 553 531 553 0.97 7 12 2.4e-05 0.0016 19.0 4.9 2 23 557 578 556 578 0.98 8 12 0.12 7.7 7.4 3.8 2 23 592 614 591 614 0.96 9 12 0.022 1.4 9.7 1.6 3 23 622 642 620 642 0.96 10 12 0.0076 0.5 11.1 1.4 2 23 649 670 649 670 0.98 11 12 0.00037 0.024 15.3 2.7 1 23 676 699 676 699 0.97 12 12 0.53 35 5.3 1.5 1 22 703 724 703 726 0.87
Sequence Information
- Coding Sequence
- atggtgtgccgatattgtctcacagtcacatctccactatcagaactcgatcagatattgcaagttgccggaaaaagagctatatataaagttaccataagggatatgcttgctagcttccatccatataaggttacggaggatcctaattttccaaataaaatatgtgaaaaatgtctcagaagagctatcagttcatatctcttcactcagcaatgtgaacaagctgagcgtgctttaaggaactgttttgatgatatgtatgataaggtagaaaagctggacccattggagcgtccaaaaaaacgtggaagacagaaacaacacccaaattataatatactatacacagaacatgtaaatgtaattgattatgcagaacctataattaatatggtacatacagcatcagaatcactgacgaaagaggatggcattaaagattttgaatgtctaaaatgctgtcaagtgcttcctaatattgagtctttgttgaaccatgaaaagagtcatccagtctctatgtggtaccattgtagattgtgtggtaaatcctttcctaagctctatagtttgagtcggcacatgggtacccataaaagaaaaaaaccagttatcaacaaagttgaaacaatattcacatgtaatagatgtggagatgttagtaaaaaccacaataaatatttgcagcatttagagaagcataagtttaaaacaattatggaacacttagtggagaaaaagatgaataggttgtgttccatatgtttggaaaaaagtgcaaatatgatagatttggataaggaactttgcttacatggtggctatacagagttgaatggagatcgtagtttgtacaccattcttggatccacattaccagaaatgaatatactacataattatactgggtcaaaaatatgcgacaagtgtcttaataaatcaataacttgttatattttcatgcatcaatttcgttgtaacaggaataggcttgaaacttgtattgaattaatactagaagggttacaaaaaattgttaaaccggaaaataatacagttattgaaatatcagaaaatgcaataatgcctattaaagtagacctagatgaaactgaatcaacaagtgaatacgattctaatgaatccaaatgtaaaattgatatcttagaagatgagtttaggataaaatctgacgacgaagatagtgaacaagatagtaaagtgcatctatcgaaagatgtcgaagtggaatctatcaaaaacttatcaaattccgtaatgaatgtaactaaaacttactctaaaaataatttggtcaacggttaccaaaaattaaataattcattcgataaagttagcgaatttttgtccttcaaagggaaaaagacgtgtaaaaaattaagtaagtgtaaattcacgtgtcctctgtgcaataaacatttcattagtaaatatttcctacgcggtcacttacttaaacacattaacaggagagtcgagtgtaaaaattgcggtaaatggttcaaatctaagtttactttatatgaacacataagaatggtgcacattttgaaaaagaacaactgttattcttgcagtacctgtggaaggtgtttcgtcgatcgaaataaactaatgtcacacgaaaaacatcatcgtaataagaaatgtaatctttgcgataaggtatttaaaactcagaatcacttcgataatcatatgcaaaggcattcggttaaattacgaattatgaaggagaacaatattcaaacgtgcaatttctgtgagaaagagtgttacagtgagaatgaactctcccatcatgttaacaaagtccatttacaaataagaccctacggttgtgatatgtgcgatgctaatttctccacggaatacaatttgaactgtcataaaaaaatacacagtctaccttcgaaggaaacttgtgagttctgtagggaaactttgaaatctagaaaacttttagtgatacatctgaggaaacacttgggcgtgactcctcatgtctgccaagtttgcggtacctcattctattcgcagttgaaaatgaaaacgcacatgaaagtgtttcacggaggtaaatttatttgcagttgttgccaaatcggcttcgtcagtagatcgaagttgaaagaacatttcacagcagtccatagcgctatataa
- Protein Sequence
- MVCRYCLTVTSPLSELDQILQVAGKRAIYKVTIRDMLASFHPYKVTEDPNFPNKICEKCLRRAISSYLFTQQCEQAERALRNCFDDMYDKVEKLDPLERPKKRGRQKQHPNYNILYTEHVNVIDYAEPIINMVHTASESLTKEDGIKDFECLKCCQVLPNIESLLNHEKSHPVSMWYHCRLCGKSFPKLYSLSRHMGTHKRKKPVINKVETIFTCNRCGDVSKNHNKYLQHLEKHKFKTIMEHLVEKKMNRLCSICLEKSANMIDLDKELCLHGGYTELNGDRSLYTILGSTLPEMNILHNYTGSKICDKCLNKSITCYIFMHQFRCNRNRLETCIELILEGLQKIVKPENNTVIEISENAIMPIKVDLDETESTSEYDSNESKCKIDILEDEFRIKSDDEDSEQDSKVHLSKDVEVESIKNLSNSVMNVTKTYSKNNLVNGYQKLNNSFDKVSEFLSFKGKKTCKKLSKCKFTCPLCNKHFISKYFLRGHLLKHINRRVECKNCGKWFKSKFTLYEHIRMVHILKKNNCYSCSTCGRCFVDRNKLMSHEKHHRNKKCNLCDKVFKTQNHFDNHMQRHSVKLRIMKENNIQTCNFCEKECYSENELSHHVNKVHLQIRPYGCDMCDANFSTEYNLNCHKKIHSLPSKETCEFCRETLKSRKLLVIHLRKHLGVTPHVCQVCGTSFYSQLKMKTHMKVFHGGKFICSCCQIGFVSRSKLKEHFTAVHSAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -