Basic Information

Insect: Samia ricini
Gene Symbol: -
Assembly: None
Location: BLXV01000002:9566691-9567821[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0027 0.18 12.5 3.0 1 22 155 176 155 179 0.90

2 7 9.2e-05 0.006 17.1 1.5 1 23 184 205 184 205 0.98

3 7 9.2e-06 0.0006 20.3 2.8 1 23 211 233 211 233 0.98

4 7 8.4e-05 0.0055 17.3 1.3 1 23 239 261 239 261 0.99

5 7 1.8e-07 1.2e-05 25.7 1.5 1 23 267 289 267 289 0.99

6 7 3.9e-05 0.0026 18.3 0.9 1 23 295 318 295 318 0.97

7 7 0.00012 0.008 16.8 1.7 1 23 324 347 324 347 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0027	0.18	12.5	3.0	1	22	155	176	155	179	0.90
2	7	9.2e-05	0.006	17.1	1.5	1	23	184	205	184	205	0.98
3	7	9.2e-06	0.0006	20.3	2.8	1	23	211	233	211	233	0.98
4	7	8.4e-05	0.0055	17.3	1.3	1	23	239	261	239	261	0.99
5	7	1.8e-07	1.2e-05	25.7	1.5	1	23	267	289	267	289	0.99
6	7	3.9e-05	0.0026	18.3	0.9	1	23	295	318	295	318	0.97
7	7	0.00012	0.008	16.8	1.7	1	23	324	347	324	347	0.95

Sequence Information

Coding Sequence: atggtcggcgctatgatgctatttaaaatgctacattgcaaacatcttcgtgtaggtttgtccgatggagaaggaacttcacaaaacaaaagtttatggaaaaataatatcaataataaaagaaaattcaatgataatgcatgtagagtttgtttacaaacaggtaatatttctatatatgaaaacggcgatatcgttgaagctttaaatgttatatgcggtgtatacatcagttctaacgatccatacccaaaatcgctctgccaaccatgtcacacagcgcttcaaaatgcattatcgcttaggaaaactgcgcaaacttccgatgaattacttaaacaacccctagacgttacagaagaccataacttgaataacgaattagtcgattttgatgacaatttatactcttatgatgaatatgagccttcaaaaaaatcaagcaacaaaagaacaagagattacttctgtaaaaaatgcaacatggaatttaaaacttgcagtgattacatagaccatagaatttccgatgaacatgacaacatgagatatacttgtactgtttgtaacaaatcttacagagctgagtattataaaaaacacttagctacacacaacgaagatccgccatatatgtgtgaattttgtggcaaaaaatttaacgtacagggtcattttgcgagacaccgacttactcatttctacaatttgccttataaatgtggtttatgtccatataagggtagatttagagaatcactaaagatgcacatgaggacacacactggtgagaaaccatatcaatgctcacaatgcccttcaaggtttataaacaaaagtaatcttaacaaacacatgctaacacatagaggacagcatgattacaagtgtgattcatgtgggagaggcttctacacaaaacgagaattagagatgcacttcaaagtagatcatactggcataaaagaccatatttgtagtttatgtggcaaagcatttggttatagaaagcaaatgatgaaacaccagttaaaagttcataagagagagaagcttaagagcggaagaactccactttatgttaaggtggagttgatgaaacaaaagggtgaagatattgcaattgattga
Protein Sequence: MVGAMMLFKMLHCKHLRVGLSDGEGTSQNKSLWKNNINNKRKFNDNACRVCLQTGNISIYENGDIVEALNVICGVYISSNDPYPKSLCQPCHTALQNALSLRKTAQTSDELLKQPLDVTEDHNLNNELVDFDDNLYSYDEYEPSKKSSNKRTRDYFCKKCNMEFKTCSDYIDHRISDEHDNMRYTCTVCNKSYRAEYYKKHLATHNEDPPYMCEFCGKKFNVQGHFARHRLTHFYNLPYKCGLCPYKGRFRESLKMHMRTHTGEKPYQCSQCPSRFINKSNLNKHMLTHRGQHDYKCDSCGRGFYTKRELEMHFKVDHTGIKDHICSLCGKAFGYRKQMMKHQLKVHKREKLKSGRTPLYVKVELMKQKGEDIAID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00114378;
90% Identity: iTF_00113577;
80% Identity: -