Sric002711.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- -
- Assembly
- None
- Location
- BLXV01000002:32677142-32682253[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.15 9.8 7.0 1.2 3 23 195 216 193 216 0.91 2 14 0.059 3.9 8.3 1.0 1 23 222 244 222 244 0.97 3 14 0.9 59 4.6 6.5 1 23 250 272 250 272 0.96 4 14 0.75 49 4.8 0.1 3 22 280 299 279 299 0.92 5 14 0.0061 0.4 11.4 0.0 2 23 335 357 334 357 0.95 6 14 0.15 9.7 7.1 0.3 2 23 364 385 363 385 0.97 7 14 2.2 1.4e+02 3.4 1.3 3 23 393 412 392 412 0.90 8 14 0.0003 0.02 15.5 0.1 2 21 419 438 418 439 0.94 9 14 6e-05 0.0039 17.7 0.9 2 23 455 476 454 476 0.97 10 14 0.00022 0.014 16.0 0.4 1 23 484 506 484 506 0.98 11 14 0.00013 0.0084 16.7 0.9 1 23 511 533 511 533 0.96 12 14 2.2e-05 0.0014 19.1 2.6 1 23 539 561 539 561 0.98 13 14 0.00081 0.053 14.2 6.0 1 23 567 589 567 589 0.94 14 14 7.8e-05 0.0051 17.4 3.6 1 23 595 618 595 618 0.97
Sequence Information
- Coding Sequence
- atggagttagacaaggaagaaacacatttatattattgtagattttgcagtgaaaaaatgaaagacattgaacttttcaattttataagtaacacagaagtactggaacaaataattaattttacaaagaaatttaaaattgatcatctagatctaagtaatgataaattaccgaatacgatttgtacagcttgttacaaaaatatcatacaatttaattgtttctttatgcaaattaaacaatctcaaattatattaagtgaaatatataatactgttgaagaaaaatgtaacagtgagttggaagttaagtatgaagaaaataacacatcatcagccaacggtgataatttagatatagtcttggatataaaaaaggaaaatgtttttgaaataacttcaaatgaattgaatctcggtggttcaactagcaatgattcaggagaaattcctataagttataatctatatgggcacgaagatgtatatgtgtctaaagaatccaatattttaatagatgttaagaaggaaattgaagaaagcagtgtaacatatgactcttgggtagattacagttggatttgtgtccactgtaaaacaaaattcacttctatagatgaaataaggattcacagcaaacaaaatcataagaagtgttattgtttcagttgtgttgattgcagagaaaagtttaatatgttcaatttatttattgaccatgtaagacagcacagaccatcattaagatattactgccaatattgtaatcaaaaatttgatacaacaacccaatgctttcaacatttaacatcacacagacaacacggacaggagatttgtaaatattgtggtgaaataatgaaggattccctaatgttggatgagcatttgagaaagtttaaaaacaatcgaaaatatgttacaattacaccacacagagttgcagatgacacaatgcttctagaaacaggagcagaagcttcttggttagattataattggtcgtgtcaagtgtgcagccagagattaccggatgctgatgcactaaggctacacatccgcaatgtacataataaatgttttgcaatgaaatgcatggactgtgcaatggttgtaaagaatttcaaaatgtttgttgctcatgttcgtcgacatcggccttatttaaagaatttctgtcagtactgtaataaaaatttgaaagaaaactcggtaaccgagcatatgaaggatcacgaatatggaacaaaacaaccttgtctcggctgcgggcagatgttcgaaaatgttgacatgttacagaaacatatgcgacaattcatttctacgagaccggcccggtctcttacggaagccgacttaacttgtgccgtatgcaacaaagtgttttcatctttagcaaggctcaggcaacataagaaaacacacgacaggaaccgaacgcgtaactacacgtgcgatacttgcgggaaagcgttttatgagctaaacgttttgagagcacacaaattgacacacagcgagaaaagattcgcctgcaagctgtgcgaaaaagctttccacacgaagataaacttgcgtgagcatgtcgctatgcatttggacgagaagctcttccaatgcgacgagtgtggtaaagggttcaacattaaaaatcatttaaaataccatttgactacgcacagcggtaacaaaccgcacaaatgtcaagtgtgcggtaaagcgttcaggtccacccatgacctcaaaatccattcccaccaacacactggcctgaggccgtactcttgtgagctttgcgacaggacttttgtcaatttgagcaactgtcgcagacatatgatgaggagacatggcgtgtctttatccaagaagaaaaataagacgaaaattaaaattgataatgaagcaaaagaatggatcgacactttaggacataacaaacatcccagtggagcactcggaactacgaaaaaaatgtcgtga
- Protein Sequence
- MELDKEETHLYYCRFCSEKMKDIELFNFISNTEVLEQIINFTKKFKIDHLDLSNDKLPNTICTACYKNIIQFNCFFMQIKQSQIILSEIYNTVEEKCNSELEVKYEENNTSSANGDNLDIVLDIKKENVFEITSNELNLGGSTSNDSGEIPISYNLYGHEDVYVSKESNILIDVKKEIEESSVTYDSWVDYSWICVHCKTKFTSIDEIRIHSKQNHKKCYCFSCVDCREKFNMFNLFIDHVRQHRPSLRYYCQYCNQKFDTTTQCFQHLTSHRQHGQEICKYCGEIMKDSLMLDEHLRKFKNNRKYVTITPHRVADDTMLLETGAEASWLDYNWSCQVCSQRLPDADALRLHIRNVHNKCFAMKCMDCAMVVKNFKMFVAHVRRHRPYLKNFCQYCNKNLKENSVTEHMKDHEYGTKQPCLGCGQMFENVDMLQKHMRQFISTRPARSLTEADLTCAVCNKVFSSLARLRQHKKTHDRNRTRNYTCDTCGKAFYELNVLRAHKLTHSEKRFACKLCEKAFHTKINLREHVAMHLDEKLFQCDECGKGFNIKNHLKYHLTTHSGNKPHKCQVCGKAFRSTHDLKIHSHQHTGLRPYSCELCDRTFVNLSNCRRHMMRRHGVSLSKKKNKTKIKIDNEAKEWIDTLGHNKHPSGALGTTKKMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -