Basic Information

Insect: Samia ricini
Gene Symbol: ham
Assembly: None
Location: BLXV01000007:26333268-26432131[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.38 25 5.8 0.1 2 23 212 234 212 234 0.91

2 8 0.0014 0.094 13.4 0.7 1 23 241 264 241 264 0.93

3 8 1.5e-06 9.6e-05 22.8 1.7 1 23 290 312 290 312 0.95

4 8 5.2e-05 0.0034 17.9 6.1 1 23 318 340 318 340 0.99

5 8 9.7e-05 0.0064 17.1 0.4 2 21 348 367 347 368 0.94

6 8 1.2e-08 8.2e-07 29.3 0.7 1 23 763 785 763 785 0.98

7 8 4.5e-07 2.9e-05 24.4 1.7 1 23 791 814 791 814 0.97

8 8 4.9e-06 0.00032 21.2 3.3 1 23 820 842 820 842 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.38	25	5.8	0.1	2	23	212	234	212	234	0.91
2	8	0.0014	0.094	13.4	0.7	1	23	241	264	241	264	0.93
3	8	1.5e-06	9.6e-05	22.8	1.7	1	23	290	312	290	312	0.95
4	8	5.2e-05	0.0034	17.9	6.1	1	23	318	340	318	340	0.99
5	8	9.7e-05	0.0064	17.1	0.4	2	21	348	367	347	368	0.94
6	8	1.2e-08	8.2e-07	29.3	0.7	1	23	763	785	763	785	0.98
7	8	4.5e-07	2.9e-05	24.4	1.7	1	23	791	814	791	814	0.97
8	8	4.9e-06	0.00032	21.2	3.3	1	23	820	842	820	842	0.98

Sequence Information

Coding Sequence: atggcgccaggaactgatatgaaagaatattatggagccatcgattttggcttgtcagatacttacctgtcgaatttccccgagtacggacgtggatatttacccagtgctttagatttacccaatcaaggctttttggatccaaaaagttcaaagggcaaggacgattcgaaggatgatgatataggagaagattttaatttaccaattgaattaattttgaaaaatagcggaatatttgctagagtgaatatttccattggaacaaaatatggaccttttgtaggcaaatgggaaacgcagccactagacaggagatacgcatgggaggtcctcggtaaaaatggcgtccggggttggctggatggtacaacagagaagacgaattggctcaaattagttcggtctacgaactatccgcatgatgtcaatgtacagcatctgttgctcgctggtcaagtgtggtataaagtagttcgagacattccttctggacaagaattacttttgggaccaaggactccgctgcctcttcaagatgtaatgcctcttcccaccgaccatcaaagcttgagtgaaaaattcaactcacagttattgccagaagaggaagaccgcgaggaatctgaaccaaggtgttcgttgtgcgacacgccgttccctaatattgatgtactcgatgagcacttgatccagaggcacgcacagccagctgctgctttccactgtgaattgtgcaaccggccgtatagttcccgagtactgttactgcgccatagagctttagcccacaccgatatacggaaatatccctgcgagaattgtcctaagcgccacatccgtgcccagcacgtcggagcccgcagccacgcgtgccccgagtgcggcaaaaccttcgccacatcttcgggtcttaagcagcacacgcacatacactccagcgtgaagccgttccagtgcaaggtctgcttcaaggcctacactcagttctccaacttgtgtcggcacaaacggatgcatgtcgcttgtagggcattgatcgaatgtggaaaatgtggtcaatcattcacgtcttacgcttctcttactaaacataagagattctgtgatactgctactgcagcttcggtcaatcttcgtggacaaatgtcacaaggactaccacaattatcgactctgcaaaacgttgggatgaatacaccgaacaatggaaatcccttcccaatgtacagaggtccagggctacctttaccatatagcacatttgctcactatccggccttattttcggctgctgcagcagccggttgcccttctgagttcttaaacccattactatttaatgtccaaggcgcaagactcgccatggaacacgacattgctttgtcaaatgctactttactctctaaacaacaagaaggtcgaatgtcagtcaagagcatggacagttctgcttctcttgatgacacgaaaaaatctaaggacttggaactttataaaataaaaaaagaaaacaacaatggagagatggcagcaccaagcaaatctcaaagaagtttcactaaacattctcctccattgtcagatgatcctacttcgcagcaacatccgtcaccaatcttaccgctgcaaacatctgcagcatcatttaactttcctagggatgaactgaaaccaaagtcaccatttaatttttcattaaaacctcacactaataattctcaaggacataaatctgagtcacctttgcctaaagatttgtccaagaatgtaatcgatgatgacaaaacttcggtatactctgaaaatgatgatgatatgaaaaaagatgaaagtgatcaacccttagatttatctgttactaggaaacagaatgattcagaagaagacaaagacgatcgctcctttcgtaactctattaaatcatattcaccgcctgagagcccagcagatcggagtaagactcctgagaacgataccacagacgttgacgtggaagccgtagaaccgaaacgagaagattctccaacacaattggtttcaccacctttagctttccctatgcccgtacacccgcagcacaacaacataatggatgtaatgtatcgccccagatttccgtctttccatacttcagaatcaattttaaatacacactcacactatgtaccgagcccgttcaattttttatccccacttctcggcactgacggtccagataggcaacccagtggatacgctaagtttcgcgaattgagcagtggttcagtaaagcttcgtgatcgatacgcgtgcaagttctgcgggaaggtgttcccgcgaagtgcaaacctgactcgtcatctccgcacacataccggagagcagccttacaaatgtaaatactgcgagcggtccttctcaatttcatcaaacttgcagaggcacgtgaggaatatacacaacaaagaacgtccgttccgatgtcccttgtgtgacaggtgcttcgggcagcaaactaacttggatcgtcaccttaagaagcatgaggctgaaggtggggactcaccgagttctgcggacactgaacgtgaagatgcttgctttgatgatatcaggtcgttcatggggaaagtgacttgttccccgacagcacgcactccaccggcgacttcaccccacgcaccgcccccgcactcctcacaccatcctcctcgcgcaggactagcgatctctacttag
Protein Sequence: MAPGTDMKEYYGAIDFGLSDTYLSNFPEYGRGYLPSALDLPNQGFLDPKSSKGKDDSKDDDIGEDFNLPIELILKNSGIFARVNISIGTKYGPFVGKWETQPLDRRYAWEVLGKNGVRGWLDGTTEKTNWLKLVRSTNYPHDVNVQHLLLAGQVWYKVVRDIPSGQELLLGPRTPLPLQDVMPLPTDHQSLSEKFNSQLLPEEEDREESEPRCSLCDTPFPNIDVLDEHLIQRHAQPAAAFHCELCNRPYSSRVLLLRHRALAHTDIRKYPCENCPKRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHVACRALIECGKCGQSFTSYASLTKHKRFCDTATAASVNLRGQMSQGLPQLSTLQNVGMNTPNNGNPFPMYRGPGLPLPYSTFAHYPALFSAAAAAGCPSEFLNPLLFNVQGARLAMEHDIALSNATLLSKQQEGRMSVKSMDSSASLDDTKKSKDLELYKIKKENNNGEMAAPSKSQRSFTKHSPPLSDDPTSQQHPSPILPLQTSAASFNFPRDELKPKSPFNFSLKPHTNNSQGHKSESPLPKDLSKNVIDDDKTSVYSENDDDMKKDESDQPLDLSVTRKQNDSEEDKDDRSFRNSIKSYSPPESPADRSKTPENDTTDVDVEAVEPKREDSPTQLVSPPLAFPMPVHPQHNNIMDVMYRPRFPSFHTSESILNTHSHYVPSPFNFLSPLLGTDGPDRQPSGYAKFRELSSGSVKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDACFDDIRSFMGKVTCSPTARTPPATSPHAPPPHSSHHPPRAGLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00187372;
90% Identity: -
80% Identity: -