Sric009445.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- -
- Assembly
- None
- Location
- BLXV01000008:16450341-16455817[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0044 0.29 11.9 7.2 2 23 147 169 146 169 0.97 2 19 1.9e-05 0.0012 19.3 1.1 1 23 178 201 178 201 0.96 3 19 0.0011 0.074 13.7 0.3 2 23 214 236 213 236 0.96 4 19 0.00036 0.024 15.3 0.7 1 23 245 268 245 268 0.96 5 19 2.3e-05 0.0015 19.1 1.3 1 23 280 303 280 303 0.97 6 19 0.00013 0.0085 16.7 1.1 2 23 333 355 332 355 0.97 7 19 0.00044 0.029 15.0 1.5 2 23 365 387 364 387 0.96 8 19 0.0024 0.16 12.7 3.2 2 20 392 410 391 412 0.93 9 19 0.0071 0.46 11.2 0.5 2 21 417 436 416 439 0.94 10 19 0.045 2.9 8.7 0.8 3 23 449 470 447 470 0.95 11 19 0.00025 0.017 15.8 2.1 1 23 475 498 475 498 0.96 12 19 0.011 0.71 10.6 2.9 2 23 513 535 512 535 0.97 13 19 0.0021 0.14 12.9 0.7 1 23 560 583 560 584 0.94 14 19 0.31 20 6.0 0.2 2 23 590 611 589 611 0.91 15 19 0.023 1.5 9.6 4.2 3 23 619 639 617 639 0.96 16 19 8.6 5.6e+02 1.5 2.0 3 23 647 669 645 669 0.88 17 19 6.3 4.1e+02 1.9 0.8 1 23 676 698 676 698 0.81 18 19 0.017 1.1 10.1 0.1 1 23 705 727 705 727 0.97 19 19 0.072 4.7 8.0 1.9 1 23 733 756 733 756 0.97
Sequence Information
- Coding Sequence
- atgtcaataaaattagaggatataaaagttgagaatgttgaagatagccgcaaagatccaacctctttccttccggaagaggaaatgtcttacaaattaaagaagaaaaagaaaaaaaaaaagaaagtgcaagaagatccattcaaagatttagacatggagataacacattttcctgcgatgccaacattagctctggatcctgaagttaatataaaggtggagaatatagaagttgaattggattttaaagattttacagatgataatggaatgttaatggacagcaatgcaggtgaggaaagtcaaccagaaccagctattaaaatagaagatcaaacacacgaggcagtgcttcttacatttgagaatgttgttacggacaatagtgtcctcggatacaaaaccagagtgaaagacgaacatggaatactacagaagtgtaaagtgtgccatttagtatttaagtcaaataaaacattacatatgcatcaaaaaaggaagcacaaagtttttagaaaatcttttcaacacatatgtgactattgtggaatgtcctatgaaacaaagaatagtcttatcgctcatattaagagaaaacatggaccggattctcaacaggacgatacagaagaactcacatgtgagatttgtgctctagtcttcaaagggtctgcacggttgcgaatgcacatgagaagaaaacacggttcctacaaagaatcattccaacatatatgtgatgagtgtggtttaacttacgataaacaaagaagtttggttgtacacatccaaagaaagcattctggattacagccacaaatttcaaaccagtggtttaattgcccgttctgcccgaaggcatttactaaacgggagacatatgcacggcacatacaaagaaaacatcaagttaatgaagaagacggtgttataagcgataataaacctcctgaagaattggcaggtgcaagaaatgaacaaacaggtgaaataacttgcaaacagtgcccattgatgtttacatcgattaattatttaaagttgcacatgaggagaaagcataatgccctgaaagattccttcagacttaaatgcaggatatgtaacctgtcatatgataaattggaaagtttaaaaaggcacgtgcgtagaaaacatgacacgagattacattgcacaatctgcaataaacattttaacacaaaagaaaactatgtaaaccatacacacgctaaattaattaaagagtgtacgctttgcggtttaattttcgcctccgagggaggtttggccaaacacttacggtgcacacacaaaatagacacacccaagaccatattttgtaacatatgcaatgcaggattccacgataaacgtcaactgaaaccgcatttattaaaagtacatttaaaagtgtcatacacgtgtaaattctgtaataagatattcaaagcgaaagaaagttacaaacgtcacgttataatcaaacatcccacaacgataaaagaggaagtgaacaataccgaactgcagaaatgtgacaaatgcatggcgacgttcaaggatgaattcgagttgtgccgtcacataaacaaaatgcatgtgacagatgctaatgcacccgaacagctgtggttggaagtgaaaaaagaagaggtggacttcaaagattcataccagtgcacaaagtgtccagacacgtatgcctcatgggccttattaaaagcgcattatgaacaaaaccatcatatattttcagatacacagtgtcaaatgtgtggtgaaatcgtaccagggaatgaattgcagaaacatatgaaatctaatcacgtcgaaacaatagaaatgcactgcaaatactgtgatttcaaaacgatatctaagaacagtctaactcagcatactttgaggcataaaaacgctatgacgattcactgtgatttcaacggttgtcgatacaagactttctatgaaggggctatggagaaacataaacgtaaacaccaggatttgggagttaaatttcaatgtacacagtgtccctttcaaagtatgaataaatatatcttgaagtaccatgaggaagcgcatactactggtaaaaagcgttacatgtgtgaccagtgcgattatgccactatattaccagcgaacttggttcaacacaaatataagcattcaacggagaaacggtttaagtgtgaagtatgtccgtttgcaacgaaatataacacatcgctccggtttcacgtacgtaagaaacactgtgatcttcctgcaagttaa
- Protein Sequence
- MSIKLEDIKVENVEDSRKDPTSFLPEEEMSYKLKKKKKKKKKVQEDPFKDLDMEITHFPAMPTLALDPEVNIKVENIEVELDFKDFTDDNGMLMDSNAGEESQPEPAIKIEDQTHEAVLLTFENVVTDNSVLGYKTRVKDEHGILQKCKVCHLVFKSNKTLHMHQKRKHKVFRKSFQHICDYCGMSYETKNSLIAHIKRKHGPDSQQDDTEELTCEICALVFKGSARLRMHMRRKHGSYKESFQHICDECGLTYDKQRSLVVHIQRKHSGLQPQISNQWFNCPFCPKAFTKRETYARHIQRKHQVNEEDGVISDNKPPEELAGARNEQTGEITCKQCPLMFTSINYLKLHMRRKHNALKDSFRLKCRICNLSYDKLESLKRHVRRKHDTRLHCTICNKHFNTKENYVNHTHAKLIKECTLCGLIFASEGGLAKHLRCTHKIDTPKTIFCNICNAGFHDKRQLKPHLLKVHLKVSYTCKFCNKIFKAKESYKRHVIIKHPTTIKEEVNNTELQKCDKCMATFKDEFELCRHINKMHVTDANAPEQLWLEVKKEEVDFKDSYQCTKCPDTYASWALLKAHYEQNHHIFSDTQCQMCGEIVPGNELQKHMKSNHVETIEMHCKYCDFKTISKNSLTQHTLRHKNAMTIHCDFNGCRYKTFYEGAMEKHKRKHQDLGVKFQCTQCPFQSMNKYILKYHEEAHTTGKKRYMCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00114320;
- 90% Identity
- -
- 80% Identity
- -