Basic Information

Insect: Samia ricini
Gene Symbol: -
Assembly: None
Location: BLXV01000001:17918270-17928514[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.033 2.1 9.1 2.5 1 23 202 224 202 224 0.94

2 28 0.00032 0.021 15.4 0.7 2 22 252 272 251 272 0.93

3 28 0.00031 0.021 15.5 0.3 2 23 302 324 301 324 0.96

4 28 6.6 4.3e+02 1.9 0.4 2 19 340 357 339 360 0.81

5 28 3.3 2.2e+02 2.8 0.2 2 11 371 380 370 383 0.81

6 28 9.7e-05 0.0063 17.1 1.4 2 23 433 454 432 454 0.96

7 28 0.00019 0.013 16.1 1.5 2 23 490 512 490 512 0.97

8 28 0.00012 0.008 16.8 1.9 1 23 562 585 562 585 0.96

9 28 0.00093 0.061 14.0 0.1 1 23 653 675 653 675 0.97

10 28 0.0096 0.63 10.8 7.4 1 23 686 708 686 708 0.98

11 28 0.17 11 6.8 0.6 2 23 720 741 719 741 0.96

12 28 0.0059 0.38 11.5 1.1 1 23 751 773 751 773 0.98

13 28 0.0015 0.1 13.3 4.2 1 23 801 823 801 823 0.96

14 28 0.00095 0.062 14.0 1.9 1 23 834 856 834 856 0.98

15 28 0.00041 0.027 15.1 3.3 1 23 864 886 864 886 0.99

16 28 0.00023 0.015 15.9 0.2 2 23 906 928 905 928 0.97

17 28 1.4 89 4.0 0.5 1 23 946 968 946 968 0.91

18 28 0.085 5.5 7.8 3.6 1 23 975 997 975 997 0.97

19 28 0.014 0.91 10.3 2.7 2 23 1008 1030 1007 1030 0.95

20 28 0.00089 0.058 14.1 0.3 2 23 1053 1074 1052 1074 0.95

21 28 7.3 4.8e+02 1.7 5.9 2 23 1117 1139 1116 1139 0.94

22 28 0.00068 0.044 14.4 0.6 2 23 1155 1176 1154 1176 0.95

23 28 0.0037 0.24 12.1 2.8 3 23 1184 1204 1182 1204 0.96

24 28 0.0067 0.44 11.3 1.0 2 23 1215 1237 1214 1237 0.95

25 28 0.69 45 5.0 1.6 2 23 1254 1272 1254 1272 0.80

26 28 0.42 27 5.6 0.9 2 23 1345 1366 1344 1366 0.93

27 28 0.00085 0.055 14.1 0.6 2 23 1377 1399 1376 1399 0.96

28 28 2.6 1.7e+02 3.1 5.5 2 20 1437 1455 1436 1457 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.033	2.1	9.1	2.5	1	23	202	224	202	224	0.94
2	28	0.00032	0.021	15.4	0.7	2	22	252	272	251	272	0.93
3	28	0.00031	0.021	15.5	0.3	2	23	302	324	301	324	0.96
4	28	6.6	4.3e+02	1.9	0.4	2	19	340	357	339	360	0.81
5	28	3.3	2.2e+02	2.8	0.2	2	11	371	380	370	383	0.81
6	28	9.7e-05	0.0063	17.1	1.4	2	23	433	454	432	454	0.96
7	28	0.00019	0.013	16.1	1.5	2	23	490	512	490	512	0.97
8	28	0.00012	0.008	16.8	1.9	1	23	562	585	562	585	0.96
9	28	0.00093	0.061	14.0	0.1	1	23	653	675	653	675	0.97
10	28	0.0096	0.63	10.8	7.4	1	23	686	708	686	708	0.98
11	28	0.17	11	6.8	0.6	2	23	720	741	719	741	0.96
12	28	0.0059	0.38	11.5	1.1	1	23	751	773	751	773	0.98
13	28	0.0015	0.1	13.3	4.2	1	23	801	823	801	823	0.96
14	28	0.00095	0.062	14.0	1.9	1	23	834	856	834	856	0.98
15	28	0.00041	0.027	15.1	3.3	1	23	864	886	864	886	0.99
16	28	0.00023	0.015	15.9	0.2	2	23	906	928	905	928	0.97
17	28	1.4	89	4.0	0.5	1	23	946	968	946	968	0.91
18	28	0.085	5.5	7.8	3.6	1	23	975	997	975	997	0.97
19	28	0.014	0.91	10.3	2.7	2	23	1008	1030	1007	1030	0.95
20	28	0.00089	0.058	14.1	0.3	2	23	1053	1074	1052	1074	0.95
21	28	7.3	4.8e+02	1.7	5.9	2	23	1117	1139	1116	1139	0.94
22	28	0.00068	0.044	14.4	0.6	2	23	1155	1176	1154	1176	0.95
23	28	0.0037	0.24	12.1	2.8	3	23	1184	1204	1182	1204	0.96
24	28	0.0067	0.44	11.3	1.0	2	23	1215	1237	1214	1237	0.95
25	28	0.69	45	5.0	1.6	2	23	1254	1272	1254	1272	0.80
26	28	0.42	27	5.6	0.9	2	23	1345	1366	1344	1366	0.93
27	28	0.00085	0.055	14.1	0.6	2	23	1377	1399	1376	1399	0.96
28	28	2.6	1.7e+02	3.1	5.5	2	20	1437	1455	1436	1457	0.93

Sequence Information

Coding Sequence: atggctctcaaactcggaaaatgcaggctctgcctaaagctaggcgatttctactccatttttacagtagacaatgcagtccagttggcggatatggtgatggaatgctctcgggtgaaggtatatgaaggtgatgggctgccagataaagtgtgctcagaatgcatacaaaaattgagtagcgcatatatattcaagcaacagtgtgagagagcagaccaagagttgagacggaattatattccacctccaggcttcagtatcagtccaccaccaccgaaccgccagagtagcgattctgccttttccaatcacactgacagctccaatttgactaagcctccatccaccgaaggaaaggtgacaccaataagaagcactcgtaaacgtagcatcgaaagcgataacgcttcagtaagcagtcgaaataactataccccaagcacttccaagcgtatcgaagaacttaaaagatctagtaagagacctcgatttcaatctgggaataagtcccaacaagattccgattatgatgatataggatcagtatatttaccggaaagcacagggactgactcggatgagccactattgaaaaatacattcaaatgtaaggaatgccctagagaattccagtctgtcaagagtttgagtgcgcactgcaaagtccataaaaggactagtttgggacataatgcagtagtaaacatcccgactcgaagtaaagaggattctgcagaatcatcagagttaaattgtgaaaaatgtgataaaacctttaaattaaagataatgcttaaacgccatcaggagacttgcggaaaaacacctcagatatcaccaaaaaaggaactgttagtttccttggagccaatcgacgcgggcagtgccgccgtcaaaattgaatgcgaaatttgctcgaccaaatttaaagaagtcgaatatctgagaaagcacatgagattaattcacggcgctgtgcctaaacgaatctctgatggcgtaacggagaatgttccgtgcctttattgtcccgagaagttcattgactactatacccataataatcatttctcgacttgtttaaaaaaagacaaaaatatcccactcaagtgtccagtgtgtgataaggtcgctacaaagagaaaaattagtgtcacaagaaaactgattaagcatttagctgcgcatgtctccaacattgatgacagcttggatgatgacgagtccagagtgagtccggtagacgagatggtagctaccaagtcctcgggtcagagtacacccggtagtttgaactgcgatatttgtgacaaacagttcacttataaaaaagccttactgacgcataggcagaagcacaccgatgacgcagtgaagatggaaccaccggacaaggacactagtctaccgaacgaaacgtttagggaatacgattcggaatcaagtgtcgacggtgaagataacacgtgtgatatctgtgagaaggagttctcgtacaaacggcttctggtccaacacaaacggacaaagcataacatgtgttcagggacgaaacggtcgaagataaccctgaaggagtgcccggtgaggtgtctcatatgcgatctggagatgaaagttagcaatataaatgaacacaaccagaaacatatagcgatgaacatgaagccgagaaacatttacacttgtaaggagtgcgggaataacttcaagagttgcagcgctctggctaatcatataaagtttatacacaggttgaaacagcaaataccgaacgaggtaaagacgagggatgtcgtcagtacaccggacttggcggatttttgtgaggtcgttgtgacaaaagcggaacctctggattggatccagagtcacaacgactttggagaggttccgatagacgctgagagtggggttggcgggggggacgaccccgtcgtgaacatggccgggttcacttgccccatatgcggtaagcagatgccgacgctcatatcgctcaagcggcacgtcaactggcacacgtacgtcgggaacaatgttcagaaggtctacgaatgcttcgtctgcaaagagaaatttagattccaatgtcattacaaaatccacatgcgcgagcattaccatgacaagaatctggacccgaagtttctgacttgcgcaatctgcaaccggaggagtaagcacttgcgcgccgccgtagcgcacatgaactaccacaagcagacacgtttccagaacaaggattaccagtgttccatctgcaaaagggttttccaattcagaaaagtctatctctcgcatatggccatccattacaagagaggcgacagcatccagaacactgtagttggctgcgtcggtacaaatgtcgaaaacaacgtcaacgacggtacacacacgtgtaatatttgtggtaaagtgtgtgattctgagaactctttaaaacaccatacaatatggcataagtctaaaacatccctatacggtgctaggcatgagtgcgatctgtgcaatctccaattcacgggcaagaaatggctagaaatgcaccggaggacgcattacgaagacgataacggcccattcaaatgcaatatttgcggcaaagggtatacgtctgaggagtaccaccgcaggcatatgaagtcacataatttcgatcatgtgtctcataagaagcgtattgagaaactcagaaaggataaagtcaaatgtccaatttgcaatcgttactatcctgaccttgtgaaacttatccgacacctgagaaggactcacccggagagtaagatgatcaaggaggacccggatgcgcctccgcagaaatactacgcttgtaaattatgcgcgaaagtgtttcttgatgagagaaggctccaacatcacgaagaagctcacctcaggaagccggaattcttcaaatgcaaattttgcggcaagaaaacgatatcattgaagaaccatagagttcacattaaagcgcatttgacaatgaagcacgtagagaatcctctgaagtgtcctcactgtgaggaattattcgtcagaggttacgatctgcatcatcatttacgcgacgtccacgatatcaacgaaacctggatagcagaacgtactgaacaggtcttgaacggacctctgcaagatctgcagtgctctgtctgcttcaaggttttggcaagtcagggtaactttcagcgtcacattgattatcacaattctctgagatgcaactactgcttcgattattttagcggtttgagatttttggaaggacacttggcgtttgcctgtgagaagaaacagttgataggcgacacagagatataccccaagaaagtgaaatgtcacatctgctacaaagcgttccacctgcaagtcaagttagattgtcacctgagaacccaacacgacataagtgtgcatcgcgaagcctcatccggaaagaaagaaagcacttgcgattattgtttcaaagtgtttgaaaacgaatacgcactgacaaaccataagatatatcacaggactgttggatattatggatgtacttattgcaaaaagaaattcaacacattgacactttataggaaacacaagaatgcgcaccttgcacaactgaacgtcgataatcctacgaaatgcgagcattgcgatgagacgtttgtcgctttcagagaatttatataccacatgcgggacgtccacggcgacaataaggaatgggttgtcatgcccaaagatgccattgaggaaacttgtcccatctgtaacaaagtgtttctcaatttacacaaacacctcggctatcacgaggagaataagtgtaagaagtgtggggaatacttttactcgaccgtcgactgcgacaaccacttgtgcgccatcgagagtgatgacgaagcgactacgaactctgtcgaaacaaaagaacagaaatacgaggaatgtcgtttttgcttcaaacctataacaaagaagaattccaagaagttacacgatcaaatacacaaaggttccggatcaatatcctgtcggttctgttcacttaaatttaaaactatggacgccttcaatatacacgctttctcgcatcgaagtaggaagtacaacaagagaccgataaagtgcaggaaatgcggcgagaaattcgtacagtacgggccatttatgagacacatgaaacaagttcataagatcaccaagaaagtacactacagaaggacagtgaaaccggaaaaatgtcgggtgtgcggtgatgccttcccgaaccttcataaccactaccgagcgcacttgcttaaccagtgtcaactatgtcagaagtatttcacatcttgcaaattatattcgaagcacgaatgtgataaagaagatgctgatcccaccaaagtgtttatgtgtgatgaaagtttaacgcatctcataaatacttacatacctaaagacgagaaagacgatgagaaattctacggttacagcgacgaggaggatgaagaaactgcccctaaaccacccccattgaagcaggaggtagatcctgaagagaaagtgcttcatgaaatggtccaatctccgattatatctgacgttttatcgcttttccataaagaggagacgaagagtcaagacggggattgtatcagccaagatggtgaatgtattagccagaatagtgacgtggacgtggtgaatctgaccgaggatgattcggtggatattaacgacgagatccctattgttgtcattgatgatgactag
Protein Sequence: MALKLGKCRLCLKLGDFYSIFTVDNAVQLADMVMECSRVKVYEGDGLPDKVCSECIQKLSSAYIFKQQCERADQELRRNYIPPPGFSISPPPPNRQSSDSAFSNHTDSSNLTKPPSTEGKVTPIRSTRKRSIESDNASVSSRNNYTPSTSKRIEELKRSSKRPRFQSGNKSQQDSDYDDIGSVYLPESTGTDSDEPLLKNTFKCKECPREFQSVKSLSAHCKVHKRTSLGHNAVVNIPTRSKEDSAESSELNCEKCDKTFKLKIMLKRHQETCGKTPQISPKKELLVSLEPIDAGSAAVKIECEICSTKFKEVEYLRKHMRLIHGAVPKRISDGVTENVPCLYCPEKFIDYYTHNNHFSTCLKKDKNIPLKCPVCDKVATKRKISVTRKLIKHLAAHVSNIDDSLDDDESRVSPVDEMVATKSSGQSTPGSLNCDICDKQFTYKKALLTHRQKHTDDAVKMEPPDKDTSLPNETFREYDSESSVDGEDNTCDICEKEFSYKRLLVQHKRTKHNMCSGTKRSKITLKECPVRCLICDLEMKVSNINEHNQKHIAMNMKPRNIYTCKECGNNFKSCSALANHIKFIHRLKQQIPNEVKTRDVVSTPDLADFCEVVVTKAEPLDWIQSHNDFGEVPIDAESGVGGGDDPVVNMAGFTCPICGKQMPTLISLKRHVNWHTYVGNNVQKVYECFVCKEKFRFQCHYKIHMREHYHDKNLDPKFLTCAICNRRSKHLRAAVAHMNYHKQTRFQNKDYQCSICKRVFQFRKVYLSHMAIHYKRGDSIQNTVVGCVGTNVENNVNDGTHTCNICGKVCDSENSLKHHTIWHKSKTSLYGARHECDLCNLQFTGKKWLEMHRRTHYEDDNGPFKCNICGKGYTSEEYHRRHMKSHNFDHVSHKKRIEKLRKDKVKCPICNRYYPDLVKLIRHLRRTHPESKMIKEDPDAPPQKYYACKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLKNHRVHIKAHLTMKHVENPLKCPHCEELFVRGYDLHHHLRDVHDINETWIAERTEQVLNGPLQDLQCSVCFKVLASQGNFQRHIDYHNSLRCNYCFDYFSGLRFLEGHLAFACEKKQLIGDTEIYPKKVKCHICYKAFHLQVKLDCHLRTQHDISVHREASSGKKESTCDYCFKVFENEYALTNHKIYHRTVGYYGCTYCKKKFNTLTLYRKHKNAHLAQLNVDNPTKCEHCDETFVAFREFIYHMRDVHGDNKEWVVMPKDAIEETCPICNKVFLNLHKHLGYHEENKCKKCGEYFYSTVDCDNHLCAIESDDEATTNSVETKEQKYEECRFCFKPITKKNSKKLHDQIHKGSGSISCRFCSLKFKTMDAFNIHAFSHRSRKYNKRPIKCRKCGEKFVQYGPFMRHMKQVHKITKKVHYRRTVKPEKCRVCGDAFPNLHNHYRAHLLNQCQLCQKYFTSCKLYSKHECDKEDADPTKVFMCDESLTHLINTYIPKDEKDDEKFYGYSDEEDEETAPKPPPLKQEVDPEEKVLHEMVQSPIISDVLSLFHKEETKSQDGDCISQDGECISQNSDVDVVNLTEDDSVDINDEIPIVVIDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -