Sric001050.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- Znf131
- Assembly
- None
- Location
- BLXV01000011:15329564-15333011[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.005 0.33 11.7 0.5 1 23 170 193 170 193 0.97 2 12 0.00055 0.036 14.7 0.1 2 23 218 239 217 239 0.97 3 12 5.5e-06 0.00036 21.0 1.2 1 23 245 267 245 268 0.96 4 12 0.00073 0.048 14.3 3.8 1 23 275 297 275 297 0.98 5 12 9.9e-06 0.00065 20.2 1.4 1 23 303 325 303 325 0.97 6 12 0.0003 0.02 15.5 0.3 2 23 332 353 331 353 0.96 7 12 6.2e-05 0.0041 17.7 2.9 1 23 359 381 359 381 0.98 8 12 1.5e-06 9.7e-05 22.8 0.9 3 23 389 410 388 410 0.97 9 12 2.3 1.5e+02 3.3 0.1 14 23 425 434 416 434 0.75 10 12 0.00089 0.058 14.0 0.6 1 23 440 463 440 463 0.93 11 12 0.0017 0.11 13.1 0.3 1 23 469 494 469 494 0.95 12 12 1e-06 6.7e-05 23.3 1.8 1 23 500 523 500 523 0.96
Sequence Information
- Coding Sequence
- atggttacagaactatgtcgagtatgtctcgataaaagaggcactttgtgtattttcgacaaacaagatgaattactgtatagcgaaaaaataatgaaatgcgtgaatatcaccattactgcggacgatgggatgccggactccatctgtgaaatgtgtgctagagatctgtctgtctcatatgagttccttactaaatgcaaaacatcagacgctgctctacgctgtctctccttcgacaaccaaccaaattatgatctaaatgaagaaaacataaaagctgaagcatttgaagatattacctattctaaattagatcagaaagcagacttatctgatgatttttcttatcctccgtttgacagtagagctgatttaaataaaattagagttaagaaaaggaaaaaaaagaaatcaactccagttacttgttatatctgtggatttgaagccttgtgttattcaattttagaaagtcacatgctaatacatactaaggataaaccatttacttgtagtttgtgtgaatctgcatttatcctagaagaaatgctttatcgccacatgaagtctaggcataataatgtcttacatcagagtaataaagttaatggttatgtgaaaaaggctaggccaaaaatgggaccaatacaatgtgttatctgtggattaatggttaagagtaaatctgcaatggaagctcacagccgtacccatactggtgaaaaaccatttaggtgcgatctatgtgatatggcatttaatgtaaaaggttcactcaagaagcacattgaaacacatcatttggaaagggaaagaaaatttatatgtgagacttgcggctgtagtttctttcgtaaatgtgaaattatagcacatataagaagacacactgatgaaagaccatactcgtgccaactgtgcccaaaatcatttagacaaatttcatccttgatacgtcacaaatattcacacacaggtgaacggagacaatcatgtcccatatgctttaaaatgttttatgataaagcaggtatacggaaacacctgtcagttcatagtgacgaaagaaaatacagctgtcacctctgcaacaaatctgtcaagagtaaaacatcattggcaactcatttaaaattgcactccaatgaaaaacagaatatatgtaatttttgtgggaaggctttctctttaaaaggtaaccttcaaacacacatacgtagaaaacattcagaaaaatctggaccatgtttggtgtgtatgaaaccattcccagatttagaggagcacatgcgtaaacatacaggtgagaaaccatttgtgtgtaagatatgtgaacaagcttatgctacgaaacggagtctctcataccatattatattcaaacatgaaaatgctgaaaaatttaaatgttcaattggagaatgtacaaagacattccccactggaaagttgctggaagtacatcttgttaaatatcatacaaaccatacaccatatgtctgtcctcattgctcaagaggcttctatcgtaacagtgaccttacgagacatctcaagggcagtcatatggacacaacaaaggttacattgaagacgaatatacttgatactacatag
- Protein Sequence
- MVTELCRVCLDKRGTLCIFDKQDELLYSEKIMKCVNITITADDGMPDSICEMCARDLSVSYEFLTKCKTSDAALRCLSFDNQPNYDLNEENIKAEAFEDITYSKLDQKADLSDDFSYPPFDSRADLNKIRVKKRKKKKSTPVTCYICGFEALCYSILESHMLIHTKDKPFTCSLCESAFILEEMLYRHMKSRHNNVLHQSNKVNGYVKKARPKMGPIQCVICGLMVKSKSAMEAHSRTHTGEKPFRCDLCDMAFNVKGSLKKHIETHHLERERKFICETCGCSFFRKCEIIAHIRRHTDERPYSCQLCPKSFRQISSLIRHKYSHTGERRQSCPICFKMFYDKAGIRKHLSVHSDERKYSCHLCNKSVKSKTSLATHLKLHSNEKQNICNFCGKAFSLKGNLQTHIRRKHSEKSGPCLVCMKPFPDLEEHMRKHTGEKPFVCKICEQAYATKRSLSYHIIFKHENAEKFKCSIGECTKTFPTGKLLEVHLVKYHTNHTPYVCPHCSRGFYRNSDLTRHLKGSHMDTTKVTLKTNILDTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01316599;
- 90% Identity
- -
- 80% Identity
- -