Sric017461.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- -
- Assembly
- None
- Location
- BLXV01000022:3960378-3983965[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.054 3.6 8.4 0.1 3 23 135 155 133 155 0.94 2 14 0.0017 0.11 13.2 2.7 1 23 262 284 262 284 0.99 3 14 3.3e-05 0.0021 18.6 0.3 1 23 290 313 290 313 0.96 4 14 0.0013 0.087 13.5 4.1 1 23 318 341 318 341 0.94 5 14 0.00011 0.0072 16.9 0.4 2 23 503 524 502 524 0.97 6 14 0.00037 0.024 15.3 3.3 1 23 530 552 530 552 0.98 7 14 0.26 17 6.3 4.9 1 23 615 637 615 637 0.96 8 14 0.013 0.88 10.3 6.6 1 23 672 694 672 694 0.95 9 14 8.1e-06 0.00053 20.5 0.4 1 23 701 723 701 723 0.97 10 14 0.0036 0.24 12.1 1.2 1 23 732 754 732 754 0.98 11 14 0.0012 0.075 13.7 0.4 3 23 802 822 801 822 0.97 12 14 0.0056 0.37 11.5 5.0 1 23 839 861 839 861 0.97 13 14 1.5e-06 9.6e-05 22.8 0.7 1 23 867 889 867 889 0.98 14 14 8.9e-07 5.9e-05 23.5 3.1 1 23 895 918 895 918 0.98
Sequence Information
- Coding Sequence
- atgaatggcatggccatagaaatagacccactgggtgcttatgagtacacaacttatgacagttatggtaatgttacaacaccatatgcatatgataaacaaaacttaaaagttgaagttccagtgtcttataattttacccaaaactacaatacagttttgcctagcaatgcagcgcatattcaaaatgatatactaattgtaccggatacaaatattgagaaacatattgaaatcccagtgttaaataacagcatagacacaagcaataacaatcttgatgcagttgatgatatcaaacctgttatattagatggagcagtaaaaaaagagaagcttaaaggtaaacgcagcagctattggtctgtgaaaataactgataaagatttcccattctatggatgttccgtatgcaatgttagtttcataacacttcaagaattagaccaacatgttaccgcacataaagatagaataacaagctatgaccttcgtgtgcagaatcagataaaaaggaaaagattaaaaaaggagaaaaaattaaacaagataaagttagagaaacaagaggtggacatagaaattaagccagaagatgggtatataggtacagagaaagctagtgaatttaatgaaaatagtttagttaataatgaagataatacaaataataataagaatgaagtagagaataacagtatagagaagaaagagaagaggaaggggaatgatgtttctacaaataaagaagaagagggaaagaataaagatttacagaagatttataaatgttttgcttgtcagaagcagtttacgttaagttattatttacggttacatgtaagatcacatacagatgagaaaccctatatatgctcgatatgcggtcaatcgttcatcacggcgagcaagctgggtaggcataacaaaagaatacacttggctataagataccagtgcaggatatgtttcaaattcttctcgcaattcgatctattgactagacattttgacaaaaaacatatagaggataaactagaaggtgaaccttatgactacaatgccatcttaccatatttgaaagaactagaagagcagttgaaacagaaaacggaggccgaaaagaagccgaaaatcgaagagctatggcctgataaatgggtggaagaagaacagttcatagatccaaatattccaccaagtaaaccagaccaggaacagcacaccgatgactcgaaagagttgttaagcgttttcgaacagtctccagacataatagtcgaagatgcaaacatccgtcctcatgatgaggtgaagcaggagttggaagacgacgacctcatgaggaatgaccatgaggaccaactcgattacaacaatgacagtttctctgatgaggactatttcccctcgaacacttgggcgagggtgtccccgccgcgcttggagccgggcactccgccgtcgccgcggcgcgcgcggaggccgaggggcgaaggcccgatcacgtgcgaggtctgccagaagaccatcagctctgtcacatacctgaggatccacatgagaacgcatacgggggagaagccgttcaagtgctacgtctgcaatcgtgggtttataacgtctagtaaaatgcacaggcatgtcttgacacactccgagacttgggacgaaacgaatgtgaaacgtgaacaagtgaagtgtgagggagaggtcaacgctgaagttgttgcggaagaagagaacaatggaataaaagtaaaaaagtcaaaatccaaattccacaagaagcgacagaagctgggaccggagaaacagaagaagagataccagaagaggccgcacgcttgtgacttctgtcagaagaggttcctccacctggaaacgctgcaggtccacaagaagtcgcatgagggagagctactcattcttaagtgtaactactgcttcgaggagatgcccgacgagaccgcccggcgagaccacgaagcctcgcacactggaccgaagccctacctctgcacgctatgcgggaaatgttataagaaaagggaaaccttggtgtaccataggaaacaccacaagcccgataagcgcgattacatatgcgacatatgctcgaaacgtttcaactcgccggggaaactgcagcggcaccttgtgtcgcatagggtcgataagttcattctgcggtacgaatgtcccgtctgtgcgcacatgttcaacactatataccacgtgcagatgcacttggcgacgcaccaaaaggaaggactaatcgtggaagagaataggaacgaaatccttgccatggtgttgcaaaacgcaaggaaattccccaaacagcccgacgctccatcaaacttaaccgatatgataccctcggacgaacgaagccggatctgtaacatatgcggggagatattccagcacttttattatttagaggaacacctgaaaggtcacgggtcgaggatagcgatcgaagacttgaataagccagaggaaaagaaatacacgtgccaagtctgcgagaagagtttcaagttgcactactatttaaaattgcacagtttcacgcatacgaaagagaagccgttcatatgccagcagtgtggtaaaggcttcataaccaaggggaagctgaagaggcacttggagacgcacacgggtctgaagaaatatcagtgtcatgtctgctataagttcttcacgagaccgagttaccttaggatacacgtgaggacaatacacggaacccaggattataatttccgattggacagaggttacgggtccttcggagcgctgtctgtgatgacgcaactgagtcaagggagtgtttaa
- Protein Sequence
- MNGMAIEIDPLGAYEYTTYDSYGNVTTPYAYDKQNLKVEVPVSYNFTQNYNTVLPSNAAHIQNDILIVPDTNIEKHIEIPVLNNSIDTSNNNLDAVDDIKPVILDGAVKKEKLKGKRSSYWSVKITDKDFPFYGCSVCNVSFITLQELDQHVTAHKDRITSYDLRVQNQIKRKRLKKEKKLNKIKLEKQEVDIEIKPEDGYIGTEKASEFNENSLVNNEDNTNNNKNEVENNSIEKKEKRKGNDVSTNKEEEGKNKDLQKIYKCFACQKQFTLSYYLRLHVRSHTDEKPYICSICGQSFITASKLGRHNKRIHLAIRYQCRICFKFFSQFDLLTRHFDKKHIEDKLEGEPYDYNAILPYLKELEEQLKQKTEAEKKPKIEELWPDKWVEEEQFIDPNIPPSKPDQEQHTDDSKELLSVFEQSPDIIVEDANIRPHDEVKQELEDDDLMRNDHEDQLDYNNDSFSDEDYFPSNTWARVSPPRLEPGTPPSPRRARRPRGEGPITCEVCQKTISSVTYLRIHMRTHTGEKPFKCYVCNRGFITSSKMHRHVLTHSETWDETNVKREQVKCEGEVNAEVVAEEENNGIKVKKSKSKFHKKRQKLGPEKQKKRYQKRPHACDFCQKRFLHLETLQVHKKSHEGELLILKCNYCFEEMPDETARRDHEASHTGPKPYLCTLCGKCYKKRETLVYHRKHHKPDKRDYICDICSKRFNSPGKLQRHLVSHRVDKFILRYECPVCAHMFNTIYHVQMHLATHQKEGLIVEENRNEILAMVLQNARKFPKQPDAPSNLTDMIPSDERSRICNICGEIFQHFYYLEEHLKGHGSRIAIEDLNKPEEKKYTCQVCEKSFKLHYYLKLHSFTHTKEKPFICQQCGKGFITKGKLKRHLETHTGLKKYQCHVCYKFFTRPSYLRIHVRTIHGTQDYNFRLDRGYGSFGALSVMTQLSQGSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01317523;
- 90% Identity
- -
- 80% Identity
- -