Basic Information

Insect: Samia ricini
Gene Symbol: -
Assembly: None
Location: BLXV01000003:23302969-23310103[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.7e-07 1.1e-05 25.7 0.6 1 23 481 503 481 503 0.99

2 8 1.1e-06 6.9e-05 23.3 1.8 1 23 509 531 509 531 0.98

3 8 6.9e-06 0.00045 20.7 0.6 2 23 540 561 540 561 0.98

4 8 3.9e-07 2.6e-05 24.6 0.7 1 23 567 589 567 589 0.99

5 8 8.2e-08 5.4e-06 26.7 2.1 1 23 595 617 595 617 0.98

6 8 4.9e-07 3.2e-05 24.3 1.3 1 23 623 645 623 645 0.97

7 8 8.7e-05 0.0057 17.2 7.2 1 23 651 673 651 673 0.97

8 8 9.2e-06 0.00061 20.3 0.7 1 22 679 700 679 700 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.7e-07	1.1e-05	25.7	0.6	1	23	481	503	481	503	0.99
2	8	1.1e-06	6.9e-05	23.3	1.8	1	23	509	531	509	531	0.98
3	8	6.9e-06	0.00045	20.7	0.6	2	23	540	561	540	561	0.98
4	8	3.9e-07	2.6e-05	24.6	0.7	1	23	567	589	567	589	0.99
5	8	8.2e-08	5.4e-06	26.7	2.1	1	23	595	617	595	617	0.98
6	8	4.9e-07	3.2e-05	24.3	1.3	1	23	623	645	623	645	0.97
7	8	8.7e-05	0.0057	17.2	7.2	1	23	651	673	651	673	0.97
8	8	9.2e-06	0.00061	20.3	0.7	1	22	679	700	679	700	0.96

Sequence Information

Coding Sequence: atgtgtgactggctatcttatggtgagtggtgcgatgtaaagctgttgtgtggcggtcaagcattcaacgcccatcgagccgtactagccagtgtcagcacttttctaagagaagtgctgctttcgtgtcaaacagatgaaacgcccacatttatagttttacctgattttgacttagaggcaatgtcatctgttctatattatatatacaacggagaagtagtcgtgcaaaagcaaaaaatggacaagttcttggatataataaaagcgatgcaaatattcattgattatcagtttatgacacaatccagcgagattatacgaaatacaaatttagactctaatgtattaaattttacatcgaatgtttctagattaaatatattcactttaaagcttggcgactgcggagatcaaatatattttaacataaagaaaggcgcgatgataaagaacacaagacagtgttctctaaacaagtctgatcgtcaagataagcaagcacaaagtcagaattggactgaacattgtaaagcttctttaggaaatctgaaatcgccgtatggagaccgacaaagaaactctttcctacgtgatttatttatcgagacatatcctccaaacggtaatgttaacggtcagatggcaggcgtgctagcaatatcaaatgaacactatcgtgctccggcatctgtgctcttgacgaatgcaaatggtgaggatctcagcgccgatgacactgttttagaaacatttaaaaatccgagcggcatacctattttgccttttttgtctcacccaacgaagatgcaatatctgcataaatataacaaaaattaccatgaaacatatacaaatgcatgtccaagccagtctcatccgaacgtttgttccaatgatgttcttaaaatgaaatcattttatgaaatgtgtgagacaaagagttacacgtatggttgggagaataatggttcggcacataaaagagtatcattattgccggtaacattcaaagggcaacttttatccgaaactcatagtagttatttagatttaagtacagatccaatctcagaagttcctacatcctctttaaattttcatagcaatctagcaatgaataagtcattatacggcaacgcgcctacgagaaatgaaaagcaaaaatgtacatcaggaacagcgaattcatcaaaggcaatgatttgtaatcacgttttaaacagcccttggacgtctcgggttcccaataactttaaaccctttcgaagaaaaatacaagatttggaaaacacatttcgccaaatacaaaaagttgacaacgaaggtgttatcagcgacactaacaataatattcataaatcaacgtcagaacaaaatatattaatcaccgatggagcacaatcaccacttttatatccagaaaatattaaaagtaattataaatgtactgtgtgtggtcaggtttatacgaataacgagtctctatcagtacatatgagacgtcattcaaccaccagtcgatactcctgcagtgaatgcgggaagatgttctcacaattacgtaattttaagtatcatatgtccatacatagaggtactagggagtttgcagcgacatgcaccgtctgtggaaaatatttcaacgatagaggttaccttagcagtcatatgaaaattcataggaaccgtaaggaatacaagtgttctatatgcccgaaatcgtttaaccagcgtgttgcatacaatatgcatatgaggatccacacaggtgtaaaacctcacgtttgcgaggaatgcggcaaagcattctcccgtaagatgctattgaagcaacaccaacgcacgcactccggggaacgaccttacgcgtgtccgcactgtgacaagcgtttcgccgatagatccaacatgactctgcatttgagattacatactggtataaaaccattctcctgttcgctctgccctaaatcttttactaagaaacaccacctgaagtcacatttgaattttcacaccggctctaaaccatattcttgcccactgtgcaagctagcattcacgcagtcttccaatatgagaactcatatgaagaaatgtaatgttggtgaacctacgcttacccttcctcctcctaattgtgttatttaa
Protein Sequence: MCDWLSYGEWCDVKLLCGGQAFNAHRAVLASVSTFLREVLLSCQTDETPTFIVLPDFDLEAMSSVLYYIYNGEVVVQKQKMDKFLDIIKAMQIFIDYQFMTQSSEIIRNTNLDSNVLNFTSNVSRLNIFTLKLGDCGDQIYFNIKKGAMIKNTRQCSLNKSDRQDKQAQSQNWTEHCKASLGNLKSPYGDRQRNSFLRDLFIETYPPNGNVNGQMAGVLAISNEHYRAPASVLLTNANGEDLSADDTVLETFKNPSGIPILPFLSHPTKMQYLHKYNKNYHETYTNACPSQSHPNVCSNDVLKMKSFYEMCETKSYTYGWENNGSAHKRVSLLPVTFKGQLLSETHSSYLDLSTDPISEVPTSSLNFHSNLAMNKSLYGNAPTRNEKQKCTSGTANSSKAMICNHVLNSPWTSRVPNNFKPFRRKIQDLENTFRQIQKVDNEGVISDTNNNIHKSTSEQNILITDGAQSPLLYPENIKSNYKCTVCGQVYTNNESLSVHMRRHSTTSRYSCSECGKMFSQLRNFKYHMSIHRGTREFAATCTVCGKYFNDRGYLSSHMKIHRNRKEYKCSICPKSFNQRVAYNMHMRIHTGVKPHVCEECGKAFSRKMLLKQHQRTHSGERPYACPHCDKRFADRSNMTLHLRLHTGIKPFSCSLCPKSFTKKHHLKSHLNFHTGSKPYSCPLCKLAFTQSSNMRTHMKKCNVGEPTLTLPPPNCVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00114237;
90% Identity: iTF_01312359;
80% Identity: iTF_01312359;