Sric017488.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- -
- Assembly
- None
- Location
- BLXV01000022:1694111-1707857[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.41 27 5.7 0.1 5 15 162 172 161 175 0.86 2 27 0.0057 0.37 11.5 0.1 2 23 192 214 191 214 0.90 3 27 0.033 2.1 9.1 1.8 2 23 220 242 220 242 0.93 4 27 0.0032 0.21 12.3 5.4 2 23 257 279 256 279 0.97 5 27 0.0031 0.2 12.3 0.7 1 23 286 309 286 309 0.98 6 27 0.77 50 4.8 2.1 6 23 320 338 318 338 0.87 7 27 3.9e-06 0.00026 21.5 8.4 1 23 346 369 346 369 0.98 8 27 0.00055 0.036 14.7 3.6 2 23 406 428 405 428 0.95 9 27 0.0029 0.19 12.4 0.7 5 23 438 456 436 456 0.95 10 27 0.0014 0.092 13.4 1.1 2 23 464 486 463 486 0.93 11 27 0.0032 0.21 12.3 0.3 5 23 496 515 494 515 0.93 12 27 0.0096 0.63 10.8 1.2 1 23 527 550 527 550 0.97 13 27 0.0034 0.22 12.2 0.4 6 23 562 580 560 580 0.92 14 27 0.19 12 6.7 2.1 2 19 593 610 592 613 0.95 15 27 3.2 2.1e+02 2.9 0.1 5 14 791 800 790 801 0.85 16 27 0.069 4.5 8.1 2.1 2 23 808 830 808 830 0.93 17 27 0.087 5.7 7.8 2.8 2 23 848 870 848 870 0.96 18 27 0.21 14 6.6 6.6 1 23 877 900 877 900 0.98 19 27 0.05 3.3 8.5 0.9 6 23 911 929 909 929 0.94 20 27 1.5e-05 0.00099 19.6 1.3 1 23 938 961 938 961 0.98 21 27 8e-07 5.2e-05 23.6 2.9 2 23 1010 1032 1009 1032 0.97 22 27 0.0042 0.27 11.9 1.1 5 23 1042 1060 1040 1060 0.90 23 27 0.0013 0.082 13.6 2.4 2 23 1068 1090 1067 1090 0.95 24 27 0.0033 0.21 12.3 0.2 6 23 1101 1119 1099 1119 0.93 25 27 6.2 4.1e+02 1.9 6.2 1 23 1131 1154 1131 1155 0.96 26 27 0.016 1.1 10.1 1.2 6 23 1166 1184 1163 1184 0.93 27 27 0.015 1 10.2 3.8 2 23 1197 1219 1196 1219 0.91
Sequence Information
- Coding Sequence
- atggatagggaatttttagtatccagttctgaaactttgtatacagcagatcctgagataaagtggaatcagaatgctttaccagttgtgaaagaagaattggaaaataatatagatgacgaaaattcacctggcagtgactatatgatgtcacctcaacatgttaattactatgacagtaagagtcacgtgttagaagaagtgaaggaagaacttcctggggacgaatatcgtgaagcagactgtactgtcgataacaaagtgtctcctgaaaataacatattagtggatgtcaaagataaacaaagattagaaaatgtaaacacagagttgtcattagatataaaggaagaaaatgaggataaaatatatgagcttacaataaaattagaggcggacgatgagaaagaaatgttggataatgctgaaggcaccagcgtacattatgaagtctctgtaactcctccaggatcactgtacaagttgtgcgataaaacatttaaaaatagctccaacatattaaagcaaaatagtgaacatacaaaaaaaaatcacacatcaagggataataaagtatgtcaatattgcgatgaaaattttaatagtcgtgatgatatgcttgcgcatgtcagcgatgtccacaagaagatatgtcccaagtgtgagttatgcggaaaacagttcaagaaagagcaaggtcttaaatgtcacatgttagcgatacataaactaaagaaacctcggaagttagtgattcgaaagaacatgaaatgtacatactgtgatcttgatttcaaaaataaactatacttcagaagccacatgaagcggtgtcatccccctaatgacgttacatatcaatgcgatatgtgcatgaaaatactgaaaactagagattccctagtatcccacataaaaaggtctcattatgatttcgggaggacgttcgaatgttggtgcggggagaagttccatacaccgaagcatttgtctgagcatagggggttacagcataataccacgaaaaaatatgagtacaagtgtaaggactgtgataaagtgtttagttcaaaacagtgtttaaaaactcacatgcgaaagtgtcactgtgagtacgaaagtgactgtgtgagtgagctacgaacaccgataaactctatcaaacagaagtcacaacgacataatcgtgaaagtgatgcgaaaaatcaaagagtccaatgcgatcgttgccatagaactttcacaaataatacttatctaacgacgcacaaaaaattagtgcactatgattacgacgaagtgtttaagtgttggtgcgggcaggagttctataccccgtatcagttgaagaggcataagagtatgcatgattatataaacaccaaagtccaatgtgacaagtgtcagaagttttacataaacagagattctttagtgagacataaagtgaaataccacggcgattacggcagggtttataagtgttggtgcgggaaagagttccgtactccgtcagagttagccgatcataatcgtcaacagcacgatagtaaaactgaatgtgcgaataatgataaataccaatgcgtgacttgcatgggtatatttaaaacgagaaaatatttattgaaccacatgaggagggttcattatgattatggggacagagtgtatgtatgttggtgcgggaaagtgttccgtacaccgtacaagttgtccaatcataagtacatggttcatgacagtaacaagaatgagactgtcattgccaaagtccaatgtgatgtttgcaaaagattttataaaagcaatcgtttgttagaattacactgtaaaaagctggaaatatatgaacaaatacaaacagaagaccctattaaaactatgaatatggaatatttagtacccaattctgaaactttgggtaccacaaatccagacacacagtgcaatcaacagatctttataccagttctaaaacaagaaatagaaaatgacatagatgaagaaaattcatctggcattgactataatatgtcacctcaacatgttaattattatgacagtaagagtcatgtgttagaagaagtgaaggaagaacttcctggggacgaatatcctgaagcagactgcattatagatgataaaaaacttcctgaaaataacatattagtaaatgttaaatattgtcaaagagtagaaaatgtaaacacagagttgtcattagatataaaggaagaaaatgacgataaaatatatgagcttacaataaaattagaggcggacgatgagaaaggaatgttggataatgctgaaggcgccagcgtacattatgaagtctccgtaactcctccaggatcacagtacaagttgtgcgataaaacatttaaaaatagcgatgcccacaagaagatgtatcccaagtgtgaattatgcggaaaacagttcaagagtgtgcgaggtcttaaatgtcacttaataaaaatacataaacataagaaacctccaaagggagcactagtagtgattcgaaaggatgcgaaatgtgcatattgtgatcttgattttaaaaatacatcaatttacaaaagccatatgaggttgtgtcatcccgctaagaaaataacatataaatgcggtacatgcgtgaaactatttaaaactagacattctttaatatgtcacatgaaaaggactcattatgattttgggagaatgttcgaatgttggtgcggggagcagttccgtacaccaatacacttgtctgaacataagagattacagcatacagctaaggggaaaattgaggagtacaagtgtaaggactgtgatgtagtgtttagttcagagcggtatttaacaactcatgtaaaaaagagtcactttaagtgcgggagtgagtttaaaagtgactgcgggagtgagtttaaaagtgactgtgggagtgagttaataacttcgacacaattagacaatcgtgagactcggaaacataatcgtctaagtgacacaaataatagtcaagtccaatgtgatcattgccagcgaactttcacaaataactcgtatttaatgaaacatataagacgagttcactatgattatgggaaagtgtttaagtgttggtgcgggaaagagttccgtactccataccacttacaggaacataagggtttgcacaattacagaaatagcaaagttcaatgtgataagtgtgagaaattctacaaaaataaattttctttagcgaaacataaaataaaattccacggcgagtatggcagagtatataattgttggtgcgggaaagagttccgtactccgtcagagttagccgatcataatcgtcaacagcacgatagtaaaactgaatgtgcgaataatgataaataccaatgtgtgacttgcatgagtttttgtaaaacgaaaaatggtttactgagacatataaagagaaaacatcatgattacgggaataaagtgttcaaatgtttttgcgggaaagtgtaccctactccgtaccatttgagcagtcacaagagtatgagtcatgatggcaaaaatgatgagacactcactaccaaagtccaatgcgatgtgtgcaagaaattctataaaagtaatcgtttattagaaagacattgtaaaagaatgcattgcgattacttgttcgaatga
- Protein Sequence
- MDREFLVSSSETLYTADPEIKWNQNALPVVKEELENNIDDENSPGSDYMMSPQHVNYYDSKSHVLEEVKEELPGDEYREADCTVDNKVSPENNILVDVKDKQRLENVNTELSLDIKEENEDKIYELTIKLEADDEKEMLDNAEGTSVHYEVSVTPPGSLYKLCDKTFKNSSNILKQNSEHTKKNHTSRDNKVCQYCDENFNSRDDMLAHVSDVHKKICPKCELCGKQFKKEQGLKCHMLAIHKLKKPRKLVIRKNMKCTYCDLDFKNKLYFRSHMKRCHPPNDVTYQCDMCMKILKTRDSLVSHIKRSHYDFGRTFECWCGEKFHTPKHLSEHRGLQHNTTKKYEYKCKDCDKVFSSKQCLKTHMRKCHCEYESDCVSELRTPINSIKQKSQRHNRESDAKNQRVQCDRCHRTFTNNTYLTTHKKLVHYDYDEVFKCWCGQEFYTPYQLKRHKSMHDYINTKVQCDKCQKFYINRDSLVRHKVKYHGDYGRVYKCWCGKEFRTPSELADHNRQQHDSKTECANNDKYQCVTCMGIFKTRKYLLNHMRRVHYDYGDRVYVCWCGKVFRTPYKLSNHKYMVHDSNKNETVIAKVQCDVCKRFYKSNRLLELHCKKLEIYEQIQTEDPIKTMNMEYLVPNSETLGTTNPDTQCNQQIFIPVLKQEIENDIDEENSSGIDYNMSPQHVNYYDSKSHVLEEVKEELPGDEYPEADCIIDDKKLPENNILVNVKYCQRVENVNTELSLDIKEENDDKIYELTIKLEADDEKGMLDNAEGASVHYEVSVTPPGSQYKLCDKTFKNSDAHKKMYPKCELCGKQFKSVRGLKCHLIKIHKHKKPPKGALVVIRKDAKCAYCDLDFKNTSIYKSHMRLCHPAKKITYKCGTCVKLFKTRHSLICHMKRTHYDFGRMFECWCGEQFRTPIHLSEHKRLQHTAKGKIEEYKCKDCDVVFSSERYLTTHVKKSHFKCGSEFKSDCGSEFKSDCGSELITSTQLDNRETRKHNRLSDTNNSQVQCDHCQRTFTNNSYLMKHIRRVHYDYGKVFKCWCGKEFRTPYHLQEHKGLHNYRNSKVQCDKCEKFYKNKFSLAKHKIKFHGEYGRVYNCWCGKEFRTPSELADHNRQQHDSKTECANNDKYQCVTCMSFCKTKNGLLRHIKRKHHDYGNKVFKCFCGKVYPTPYHLSSHKSMSHDGKNDETLTTKVQCDVCKKFYKSNRLLERHCKRMHCDYLFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -