Sric002801.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- -
- Assembly
- None
- Location
- BLXV01000002:31467283-31476695[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7 4.6e+02 1.8 1.5 6 23 133 151 130 151 0.94 2 12 0.00022 0.015 15.9 0.3 2 23 175 196 174 196 0.97 3 12 0.034 2.2 9.1 7.6 1 23 209 231 209 231 0.98 4 12 2.7e-05 0.0018 18.8 0.9 1 23 238 261 238 261 0.98 5 12 0.00091 0.06 14.0 0.7 2 23 267 288 266 288 0.94 6 12 4.8e-07 3.1e-05 24.3 1.9 1 23 294 316 294 316 0.99 7 12 2e-06 0.00013 22.4 0.9 1 23 322 344 322 344 0.96 8 12 5.2e-07 3.4e-05 24.2 0.2 1 23 350 372 350 372 0.99 9 12 3.1e-07 2e-05 24.9 0.5 1 23 378 400 378 400 0.98 10 12 0.00029 0.019 15.6 0.2 1 23 406 428 406 428 0.98 11 12 5.4e-05 0.0035 17.9 2.7 1 21 434 454 434 456 0.95 12 12 5.4e-06 0.00035 21.0 0.1 1 23 462 484 462 484 0.98
Sequence Information
- Coding Sequence
- atgtgtaaggccgatgcattcaagcggcgctgcctggaatccgaactaatattagtaaacatatctttaggtacggaaaatgttgttaataccggattacagatcgataagaaatgccctataaaaaatgaaaacgatgagatagacagtttattgaaccaaccttctgaagcgtccgataatatagaagatgatgactttgacgttaaacaagatattttaataaacgaattggacaaacctcaggaagaaattgagttaaaagtagtcaagaaggagattagtgatggtttcaatgaggatgaatttcatatttaccaagaaaaaactgaaaatgcacccaaagccttacccacagaggtagaagttgacaaagataaaattcacaggtgcttctgtaataacaaatttgatgataagaacaaatacgacattcacttaaatcgttaccattgtgataaatataaaggtatatttaaaaagttaaataagactaatataatacagattaagaatgaaatagtctgtcagcaatgcaatcaaaagttcagtactgttgctggttggaaggcacaccaacgttcgcacgaagcaaaggcgaaagcaacgagtgttccaagatcattcacatgctctatatgtttttccaagttcaaacataataaatccctactatctcacctacataaacatagcaaagaacctgttaaatatgaatgtaataaatgtaaaagagaattcaaatacaaagcaagattggaagatcatatactaacagtgcattctggtaatgaccttacatgtgatatatgtttgcaaagcttcacggataaggagacctataaagctcataaagacaaccatagcatttacaaatgctatcaatgtggtatatgcaagaaatcattctacatgtcgtcaacattgaaggaacatttacggacacataccggtgaaaaaccatacttatgttcagtgtgcggcagaggattcagtcaaagaaacaacatgctccaacacatgaggcgacatcaaggtgttaaaccatataaatgtgaaaattgtgacaaaggattcgtgtctaaaggtgaactggaggcacatgcaaggaagcacagcggggcacatcccttcgtttgcgatgagtgtggaaacggcttcaccacgtcaagctctctcgtcaagcatcggagaacacatacaggagaaaaaccgtacgcttgtgatctatgtccgatgcgtttcgctgcgacaggaactttgaagaatcatcgcaggacccacacaggggaacgtccctaccaatgctcgtactgtgagaaagccttcgtacagaaaaccgatctacaataccacatcctctgtcacaccggcgagcggccctatgtctgtagtcagtgcgggcagaggttccgtaagcccgctggacttaaagcccacgcgcgtctccacccgcatgacgtcacatcactaccagctcataaccaaatgtga
- Protein Sequence
- MCKADAFKRRCLESELILVNISLGTENVVNTGLQIDKKCPIKNENDEIDSLLNQPSEASDNIEDDDFDVKQDILINELDKPQEEIELKVVKKEISDGFNEDEFHIYQEKTENAPKALPTEVEVDKDKIHRCFCNNKFDDKNKYDIHLNRYHCDKYKGIFKKLNKTNIIQIKNEIVCQQCNQKFSTVAGWKAHQRSHEAKAKATSVPRSFTCSICFSKFKHNKSLLSHLHKHSKEPVKYECNKCKREFKYKARLEDHILTVHSGNDLTCDICLQSFTDKETYKAHKDNHSIYKCYQCGICKKSFYMSSTLKEHLRTHTGEKPYLCSVCGRGFSQRNNMLQHMRRHQGVKPYKCENCDKGFVSKGELEAHARKHSGAHPFVCDECGNGFTTSSSLVKHRRTHTGEKPYACDLCPMRFAATGTLKNHRRTHTGERPYQCSYCEKAFVQKTDLQYHILCHTGERPYVCSQCGQRFRKPAGLKAHARLHPHDVTSLPAHNQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -