Sric017372.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Samia ricini
Gene Symbol
-
Assembly
None
Location
BLXV01000022:1810802-1821318[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 8.3e-05 0.0055 17.3 2.1 3 23 185 205 183 205 0.96
2 16 5.5e-05 0.0036 17.8 0.7 3 23 241 262 239 262 0.93
3 16 0.023 1.5 9.6 3.7 2 23 274 296 273 296 0.92
4 16 0.00031 0.02 15.5 0.4 1 23 306 329 306 329 0.98
5 16 3e-05 0.002 18.7 1.2 6 23 340 358 338 358 0.96
6 16 2e-06 0.00013 22.4 2.1 1 23 370 393 370 393 0.98
7 16 0.00014 0.0093 16.6 2.8 6 23 404 422 401 422 0.96
8 16 0.0029 0.19 12.4 2.6 2 23 435 457 434 457 0.96
9 16 8.3e-06 0.00055 20.4 2.8 1 23 476 499 476 499 0.98
10 16 6.2e-05 0.0041 17.7 1.1 5 23 509 528 507 528 0.95
11 16 0.00089 0.059 14.0 4.1 2 23 541 563 540 563 0.96
12 16 9e-07 5.9e-05 23.5 3.1 1 23 580 603 580 603 0.98
13 16 0.00089 0.058 14.0 4.4 6 23 614 632 612 632 0.95
14 16 0.00015 0.0097 16.5 1.4 2 23 645 667 645 667 0.97
15 16 2.7e-05 0.0018 18.8 4.4 1 23 684 707 684 708 0.97
16 16 0.00078 0.051 14.2 1.9 5 23 717 736 715 736 0.95

Sequence Information

Coding Sequence
atgggtagcagggaatatttagtacccagctcggaaactttgagtaccaccacacctctggaaacacagtggaatcaacagatgtttataccatggctgaaacaagaaatagaaaatgacattgataaagagaattcacctgccactgactataatatggatgaatgtaaacccttacagttatctgaatatctcaattactatgacagtaaaattcaagtgcttgaacatgtgaagaaggaattccctgtgaatgaatattctcaagcagactgtagcaaaataatttgtgaagatatgggattagtaaatgcgactggagaacgcgttaatgagaaatacgttattgaaagattaatgaattttaatgacaaagaaaaggtagaaaataaaaacacagaggatgcattattattaaatagaaattatgaggttaaaatgaaattagagaggatagatgaggaagaagtgttggagaatgttgaggataccgagcagagtggttacaccggcgtacattatgatgtcttagtgacgcctggagaagttcactgcaagttctgtgataaaatattcattaatagtttcaatttaataaaacattacaatgaacacatgagaattataataaacattccaacatataatggaattaaagagtcacacatgtcgcaatattcatttgaacatttcgatagacacaggagggaacattctatctgtggattttgtgggaaacgatacaagaacatgcgaaatcttaaacgtcatatattagaattacatgacttctcgaaccgagcaaaaaaatacaatgtgaaatgtatatattgcaataaagatttcataaacaaatatagttttaatagccataggaaattgtgtcatcccgataaggtcgatgaggagatcagataccaatgcgatacatgcggcggtcgatatggaagtaaacggactttaatagctcatataaaaaagactcactacgattttgggagaacgtttgcatgttggtgcgggaaagtgttcagaacaccgatgcacttaaaccgacactataaaactccgcacgatggcaaattgaaagataaaaaatgtgacatataccgttgtgatcattgctggagaactttcaataacaaacccaatctagtgaagcatgttaagacagttcactatgattatggtgaagtgtttacatgttcgtgcgggaaagagttccgtactccgtaccatttgaatcgtcataagagaaggattcataacggcaataacgacggaacactcactaatacagtccagtgtgacgtttgccagaaactttataaaaacaattgttccttacaaatacatagaaaaagcatgcataacaattacaattgtctggacgatggcaaattgaaagaccaacactctgaaatatacccttgtgatcattgccggagaactttcaatatcaaaactaatctagtcaagcatatgaggagaattcactacgattacggtgaagtgtttaaatgttggtgcgggaaagagttccgtactccgtccaatttgagtcgtcataagaaaaggattcacaacggcaataatgatgaaacacaaactagtacagtccagtgtgacgtttgccggaaacttttcaaaaacaagtgtagtttacaaagacatagaaaaaacatacattacaatattctgaacgatgggaaactgaaagatcaacactgtgaaatatatcgttgcgaccattgccagagaactttcaatgacaaaattaatttaacgcagcatataagaatatatcactatgattatggtaaagtgtttgagtgttggtgcgggaaagagttccgtactccgcaccatttgagtcgtcataagagaaggattcataacggcaataacgatggaacgctcactagtacagcccagtgtgacgtttgccagaaactttataaaagcaaatattatttacaagtgcatagaagaaaaatacattttaacagtctggacgatggcaaatcgaaagaccaacactgtgaaatatattcttgcgatcattgccagagaactttcaataaaaaaattaatctatggggccatatgaggagagttcaccatgattatggtagagtgtttaaatgttggtgcgggcaagagttccgtactccgtaccatttgagtcgtcacaagagaagcattcataagggcaataatgacggaacactcactaataaagtctag
Protein Sequence
MGSREYLVPSSETLSTTTPLETQWNQQMFIPWLKQEIENDIDKENSPATDYNMDECKPLQLSEYLNYYDSKIQVLEHVKKEFPVNEYSQADCSKIICEDMGLVNATGERVNEKYVIERLMNFNDKEKVENKNTEDALLLNRNYEVKMKLERIDEEEVLENVEDTEQSGYTGVHYDVLVTPGEVHCKFCDKIFINSFNLIKHYNEHMRIIINIPTYNGIKESHMSQYSFEHFDRHRREHSICGFCGKRYKNMRNLKRHILELHDFSNRAKKYNVKCIYCNKDFINKYSFNSHRKLCHPDKVDEEIRYQCDTCGGRYGSKRTLIAHIKKTHYDFGRTFACWCGKVFRTPMHLNRHYKTPHDGKLKDKKCDIYRCDHCWRTFNNKPNLVKHVKTVHYDYGEVFTCSCGKEFRTPYHLNRHKRRIHNGNNDGTLTNTVQCDVCQKLYKNNCSLQIHRKSMHNNYNCLDDGKLKDQHSEIYPCDHCRRTFNIKTNLVKHMRRIHYDYGEVFKCWCGKEFRTPSNLSRHKKRIHNGNNDETQTSTVQCDVCRKLFKNKCSLQRHRKNIHYNILNDGKLKDQHCEIYRCDHCQRTFNDKINLTQHIRIYHYDYGKVFECWCGKEFRTPHHLSRHKRRIHNGNNDGTLTSTAQCDVCQKLYKSKYYLQVHRRKIHFNSLDDGKSKDQHCEIYSCDHCQRTFNKKINLWGHMRRVHHDYGRVFKCWCGQEFRTPYHLSRHKRSIHKGNNDGTLTNKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-