Sric019436.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- -
- Assembly
- None
- Location
- BLXV01000032:805169-815700[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 5.7 3.7e+02 2.1 0.2 2 23 30 52 29 52 0.90 2 27 0.076 5 8.0 0.1 1 23 76 98 76 98 0.96 3 27 0.00045 0.029 15.0 0.2 1 23 102 124 102 124 0.98 4 27 0.0003 0.02 15.5 0.3 1 23 129 152 129 152 0.95 5 27 0.0046 0.3 11.8 0.3 2 23 159 181 159 181 0.93 6 27 0.075 4.9 8.0 6.4 1 23 188 211 188 211 0.96 7 27 4.4e-05 0.0029 18.2 4.8 2 23 218 239 217 239 0.96 8 27 0.0021 0.14 12.9 1.5 1 23 245 267 245 267 0.98 9 27 0.00018 0.012 16.2 0.9 1 23 396 419 396 419 0.97 10 27 4.2 2.8e+02 2.5 0.6 3 17 443 457 442 466 0.64 11 27 0.00076 0.05 14.3 0.1 1 23 488 510 488 510 0.97 12 27 3.7e-05 0.0025 18.4 0.4 1 23 514 536 514 536 0.99 13 27 0.0027 0.18 12.5 0.3 1 23 541 564 541 564 0.93 14 27 6.9e-05 0.0045 17.5 0.5 2 23 571 593 571 593 0.97 15 27 0.00012 0.0077 16.8 1.1 1 23 600 623 600 623 0.98 16 27 0.0047 0.31 11.8 2.9 2 23 630 651 630 651 0.96 17 27 3.4e-07 2.3e-05 24.8 0.8 1 23 657 679 657 679 0.99 18 27 0.14 8.8 7.2 2.7 1 23 766 788 766 788 0.98 19 27 0.023 1.5 9.6 0.3 2 23 816 838 815 838 0.95 20 27 1.2e-05 0.00081 19.9 3.8 2 23 862 883 861 883 0.97 21 27 0.11 7.3 7.4 0.1 2 23 887 908 886 908 0.95 22 27 1.5 96 3.9 4.1 1 23 913 936 913 936 0.95 23 27 1.2 81 4.2 3.0 2 23 948 970 947 970 0.93 24 27 0.0066 0.43 11.3 0.3 1 23 976 999 976 999 0.95 25 27 1.8e-05 0.0012 19.4 3.0 2 23 1004 1025 1003 1025 0.97 26 27 0.00035 0.023 15.3 2.9 1 23 1031 1053 1031 1053 0.97 27 27 0.0012 0.079 13.6 2.6 1 23 1059 1082 1059 1082 0.96
Sequence Information
- Coding Sequence
- atgtccgaagcgcacacgtttgctccattaaagagattagtaaacaataggagagagaacatcctaaaagtcgatgtcaacgatatgtcctgcaaattgtgctctatgaaaccaattgatttagtcgagctcaagaatcacttaaaggaagaacatgggaaacctatagacctagatttgcatgacaatctgataccgtttaagctcaataccatcaacggatcttacaaatgtgtcatatgcagtgagagcttcattaaagtgaggattttagttatccacatgagtgtacattttaataattacagctgcgaaatttgcggatcgggcttcatgactttgagactgctaaagaagcatttggaggtgcatgagagcggcaacttcccctgcgatcgatgcgataaagtcttctcgacgccttacaaaaggacgttgcacgtccgcggcgtccatctcaagcagtatccacgtcggtgtccaatatgcccagaaagatttaactcgaactacaaaagaactatacatttacaagacgtccataaccaatcgactagggtgcataaatgcgagacgtgcggccgtggtttcaatttgaaatatcatctgatatgccacacgcgttcggtacatttgcaggagaggaatcagcagtgcgatatctgtcatcagaggttctgtaacaaggaatcattgaagaggcatatggtaatacacacaggcgagaagaatcataagtgtgatgcatgtggcatggcctttctacgccgtaagaatttgaaggaccatttgagattgcacgagataggacacaatcaagaaacgaattcaacgataactgtaaaagatgacgatggtgatgacataattctgacggtattaaaatatccgatacctctcgacaaactacgttatgaatacgaagagacaaagagaagacacagaaggaggaaaaggcaaaatcagaaaattaaagaaacagcaaatttgacgctccttgaagaaccattagcacttgacgaattcaactggaaagatacgattaagacgtcgatcacgctcaacgtgaaagcaataaatgggagcaagagaagaaaagagatcgttgaagaagcgtggaaggagaacgctataaccctattcgaaaattcatacgtttacccattcatacataatggcaataaatataaatgcttcgtatgttcgaaaccatatattgattcttctgaactgaaagagcacacttctaaacagcacacggtaaacgatatcagagatgaattgaataatagagtaagagataaaaatttaaaagtcgatatcgcttgtacacaatgcaaaatatgtttagagacacagcaaaacctgaacgctttgatggaccatttaaaagatcacggagtaaagatagatttgaattgtcaacacaatctgataccgtttaaactggacggcgaattcttcgattgccagatatgcggtgaaagttaccagaagttgcgtctcctgataatccacatgagtgtacattttaacaattacagttgcgaagtctgcggatctgtgtttatgacgttgacgctgttaaagagacacttgcagactcatcaggctggcagttacccgtgcgataggtgtaacaaaattttcagcaatccatcgaagagatcgttgcatgtaaagggtgtgcatatgaaacagttgcctcgtcggtgtccgatttgccctgaaaggtttaactcaaactatcaaagaacgaagcatctgcgtatagtccataatcaaacagcagggttgtttcgttgcgagacttgcggacgggagtacgatttgaaatatcaccttctgattcatattagatcggtccacctccacgaaaggaatgaggaatgtcccgtttgccattcgagatttttctccaagtattgcctggcgaggcacatggtaatacatacaggcgagaagggtttcaaatgtgatatctgcggcaaagcttacgtgaggcggaggaatctgcgtgaacacgtaaaaacacatgagagcgttcaaacggtttgccagagcggacataattatacaagccagattgttttagaccatgttcgtataactagttgtccaatagatactcatcggaggcaattgaactatcaacattttaatgttccaggaggatcaagacaacgacccggcccaaggacaagtgtatggcaaatgaccgtttcggagagacaaaacgcagcggtattcctcgagaatactacagcaaagcccttcttttaccagcaagcgaatttcaaatgcttctattgcagcgaagttttcccggaagtacattccgtattgcatcatacgaacattcacgagacaccggatcagacgtgcttgctcaaacagcatctcaggaaagggaagcgtgtgatcaaagttgatatatcaacattaaaatgtcgcctctgcgatcagaagtattcggaattggacgaagtacgaaagcacttaagtgttgctcataataaagaattcaatccagccggcaacggtttaattgcgtatgacttaagctcggataatggcctactatcctgccataagtgcggcaagagatttaattcgtttttccttttaaaccggcacatgaacgtacactttaacgtggtttgcgaaacttgcggcctaggtttcatgtcgtaccagcgattgatcaatcacaagatagtccatcaaaacggtgttcataaatgtgaaagatgccaggacgtgttcccaacgaaactgaagctgcgatatcatctctttaagaagcatgaagttaataacgcgaagaaagtgaagccgttgaaatgtcctcactgtttggaacgcttcgcggagcattataaaaagatgacgcatttaaaggaaatccatgggatagcgtttaagtttgactgtcagacgtgtgaagcggtgtttccaacaaggcgtgcactgaccgagcatacgacgaaacttcacacgcagaggatacagtgcaagacgtgcgggaagtgtttcgggacacggtcgctgttgaagatgcacacgcgaggccatacgggtgagaggaatttcttctgttccgtatgccagaaggcgtatatgcatgagcggacgttgagacagcacatgagagtccatggaccggtgtggaggttctcttgttcggaatgcggtagcgggttccacagtcgaaacgattttaacaagcatatgaaacagtggcatcctcagtggcagtttaagactatagataagaaatttggtgatgatattatagctaatttgacagtctggaacatcagtcacttttttatcacagtctctttaaacaatgaaaagtgtcaaaacaaatttattagaactcagcaacaggtatcaaataaggtacctcctaagctagtcgtacagcctaagaagatggatcgtcacaacgcagttattctatcggccatcttgataaacacaaatgtcgagatcacgcagcgtcttttgtcctga
- Protein Sequence
- MSEAHTFAPLKRLVNNRRENILKVDVNDMSCKLCSMKPIDLVELKNHLKEEHGKPIDLDLHDNLIPFKLNTINGSYKCVICSESFIKVRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHESGNFPCDRCDKVFSTPYKRTLHVRGVHLKQYPRRCPICPERFNSNYKRTIHLQDVHNQSTRVHKCETCGRGFNLKYHLICHTRSVHLQERNQQCDICHQRFCNKESLKRHMVIHTGEKNHKCDACGMAFLRRKNLKDHLRLHEIGHNQETNSTITVKDDDGDDIILTVLKYPIPLDKLRYEYEETKRRHRRRKRQNQKIKETANLTLLEEPLALDEFNWKDTIKTSITLNVKAINGSKRRKEIVEEAWKENAITLFENSYVYPFIHNGNKYKCFVCSKPYIDSSELKEHTSKQHTVNDIRDELNNRVRDKNLKVDIACTQCKICLETQQNLNALMDHLKDHGVKIDLNCQHNLIPFKLDGEFFDCQICGESYQKLRLLIIHMSVHFNNYSCEVCGSVFMTLTLLKRHLQTHQAGSYPCDRCNKIFSNPSKRSLHVKGVHMKQLPRRCPICPERFNSNYQRTKHLRIVHNQTAGLFRCETCGREYDLKYHLLIHIRSVHLHERNEECPVCHSRFFSKYCLARHMVIHTGEKGFKCDICGKAYVRRRNLREHVKTHESVQTVCQSGHNYTSQIVLDHVRITSCPIDTHRRQLNYQHFNVPGGSRQRPGPRTSVWQMTVSERQNAAVFLENTTAKPFFYQQANFKCFYCSEVFPEVHSVLHHTNIHETPDQTCLLKQHLRKGKRVIKVDISTLKCRLCDQKYSELDEVRKHLSVAHNKEFNPAGNGLIAYDLSSDNGLLSCHKCGKRFNSFFLLNRHMNVHFNVVCETCGLGFMSYQRLINHKIVHQNGVHKCERCQDVFPTKLKLRYHLFKKHEVNNAKKVKPLKCPHCLERFAEHYKKMTHLKEIHGIAFKFDCQTCEAVFPTRRALTEHTTKLHTQRIQCKTCGKCFGTRSLLKMHTRGHTGERNFFCSVCQKAYMHERTLRQHMRVHGPVWRFSCSECGSGFHSRNDFNKHMKQWHPQWQFKTIDKKFGDDIIANLTVWNISHFFITVSLNNEKCQNKFIRTQQQVSNKVPPKLVVQPKKMDRHNAVILSAILINTNVEITQRLLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -