Sric005104.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- -
- Assembly
- None
- Location
- BLXV01000006:17831348-17833777[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.9e-09 6.2e-06 26.0 0.0 5 40 2 38 1 40 0.93
Sequence Information
- Coding Sequence
- atgttagagttagcagtggacatggtggaaaataagaagatgtcaagtcgggaggcagaaaaaagttttgggatccctcgacggacgatattaaacaaagtaaaaaaaattcacttgaaaccagctggaagacaaaaaaaactcagtgacgaagaggaacaaaaactggcaaacgtactattagcttcagcagattacggcagccccatgacgaaaatggatgtaaaaatattgatctataaatatgtagaaaaaaattcgcgaactgatttgttcgatggcaaattaccaagcgatacgtgggtggaaggatttttaaacagacatcgttcgaaattaaccatcagaacgacagaaaacataaaaaaggtacgggctgagaaaggactagataaacttgagaagttttatactaatttaagtgaaacactaaaagaagtaccaccgatgaatatattaaattacgatgaaaccaatttgtctgacaatccaggcacttcaaaatgtgtttttagaaggggtgtcaaacatcctgaaaggatcataaatagcacaaaaagttccatttctatcatgttcactgcaagcgcagctggaacatgtttaccaacatatgtggtttataaatcctcaaatttatattctgagtggcttgaaggaggcccagctgaaaccagatacaattgctccaaatccggatggtttgatacggcttcattcgaagactattttaaaactattgtggttgagtgggcaaaacaaattcctggcccaaaagtcgtcattggtgataatttgtcttcacacataaatattgaagttgtagagttgtgtcaaaaacacaatataaggttggtatttttaccaccaaattccactcacctaacacaaccgctggacgtagcgtactttggcccactaaaaagagaatggagaaagatcttattggattataaattaaaaaatccagaacagaccaccatgaacaaaaaacactttccaaaacttttggctcagttactagaaaatatgaaacataaggaaagtaacaacataataagtggctttagagctacaggaatatggcctgtaaaatcacgaaatgtttttaagagaattcctgagtatttcgatcattcagaatatggaattgatacgactttattagattatctgaaagaatcaagggctgctaagccaatgcaaataataagaagtaaaaaattacgtacagaacccggcaagtcaaagagaacaataaaaactaaacaagaagcaaaccaagaacgagagacagaagagatcatagtgccgtggaacacagaaaatgagatgtacttagatgaaattacaggtcaagtaataggaagagaggaaactccatcgaactcatctgaaatcattggaaaaccaacactacggccccaattttcaccagtgatgtataatccagccagactggttgaatttagtatcgaaattatcaatatgcatttaggatcaccagcttacgatactaacgctcaactacccgacgtctgtgtattcaataaaaaaattagaagtgactgtcagaatcagccttttgttacttataatgaaaatgatactccagagtttttaagatcaatgacaaatatttcatctaagtctaaagtcataataacctcagatattaaagtaaatcctaagaaaatgaaggacatcaagaaaaacattaaattaactaaagtcatcggaaaatcagctttacagatgaaaatcgaaatagtattacctccgccaaatatttctagacgaggccaaataatgtttgatattatatttaatatttcctacaacatccaataa
- Protein Sequence
- MLELAVDMVENKKMSSREAEKSFGIPRRTILNKVKKIHLKPAGRQKKLSDEEEQKLANVLLASADYGSPMTKMDVKILIYKYVEKNSRTDLFDGKLPSDTWVEGFLNRHRSKLTIRTTENIKKVRAEKGLDKLEKFYTNLSETLKEVPPMNILNYDETNLSDNPGTSKCVFRRGVKHPERIINSTKSSISIMFTASAAGTCLPTYVVYKSSNLYSEWLEGGPAETRYNCSKSGWFDTASFEDYFKTIVVEWAKQIPGPKVVIGDNLSSHINIEVVELCQKHNIRLVFLPPNSTHLTQPLDVAYFGPLKREWRKILLDYKLKNPEQTTMNKKHFPKLLAQLLENMKHKESNNIISGFRATGIWPVKSRNVFKRIPEYFDHSEYGIDTTLLDYLKESRAAKPMQIIRSKKLRTEPGKSKRTIKTKQEANQERETEEIIVPWNTENEMYLDEITGQVIGREETPSNSSEIIGKPTLRPQFSPVMYNPARLVEFSIEIINMHLGSPAYDTNAQLPDVCVFNKKIRSDCQNQPFVTYNENDTPEFLRSMTNISSKSKVIITSDIKVNPKKMKDIKKNIKLTKVIGKSALQMKIEIVLPPPNISRRGQIMFDIIFNISYNIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -