Sric014008.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- -
- Assembly
- None
- Location
- BLXV01000016:13201125-13209279[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2e-10 1.5e-07 31.1 0.0 4 39 146 182 143 186 0.89 2 4 3.6e-11 2.8e-08 33.5 0.2 2 39 198 235 197 239 0.92 3 4 3.1e-15 2.4e-12 46.5 0.0 2 45 253 297 252 297 0.96 4 4 1.9e-16 1.5e-13 50.4 0.0 2 38 305 342 304 347 0.91
Sequence Information
- Coding Sequence
- atgagtggaatacaagtgaaacgcgaaccgcctgaagaagaggacgctgaataccattactcgcacacctgtctctccgatcagggttcaagcacattggaagatttagcaccgttggcaccggccggtcctgctgctactccggtttgtatcaaacaagaaccgactgatgctccgcctacagtcactttagaaactctggagtcagcgtcacataactcgcccgcctcgacatttatgggtagacataatatgaagttgacttcgaatgaaactccaaactcagctagctttacgtcactattgatgacgattaaggatgaaccgttatctgaaggagaacagcatcatttaagcggcgaagacacgagcgattcatgcggcacacaacctgagatgctgacacgcggcagccctaagagttggacgcagcgagacatggaaaacgcactcgatgcacttcgaaaacataatatgagccttactaaggcttccgcgacatatgggataccttctacgacactatggcagcgagcccacaggctgggcatcgacactccgaagaaagaaggagctgcgaagtcttggaatgaagcggacctcaagggagccctacaggcgctccgagccggcgctatatccgctaacaaagcaagcaaagcttacggtatacctagtagcacgctgtataagatagctcgtcgcgagggcatccgtctgtcggcgccgttcaacgcggccccgacgtcctggcgacgcgccgacctgcggctcgcgctcgcctccatccgctgcggcgcctgttccgtgcagcgagccgcctcgcactatggcattcccacaggaactctgtacggccggtgtaaacgtgagggtatagaactgtcccgcgcgaatccaacgccctggtctgagaacgcgatggtggaagccctcgaggctgtcagaattggtcagatgtcaatcaatcaagccgctatacattacaatttgccatattcctctctatacggaagattcaaaaggtgcaatcaacaacaagacctccagaaatgtcaagaaacggaacgacacatccaagatataagtgagtaccagcagacgcaggctcacattccgcatccatcatcagttcatgaggagggcctcacacacgcacacttgcatgcgcactcacatttcgctgttgcacaacagtacatacaccaggacacctcaacagtacacgattatggccagggattattcttcaaccagaacttcagcagtatactcaccagttga
- Protein Sequence
- MSGIQVKREPPEEEDAEYHYSHTCLSDQGSSTLEDLAPLAPAGPAATPVCIKQEPTDAPPTVTLETLESASHNSPASTFMGRHNMKLTSNETPNSASFTSLLMTIKDEPLSEGEQHHLSGEDTSDSCGTQPEMLTRGSPKSWTQRDMENALDALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWNEADLKGALQALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTSWRRADLRLALASIRCGACSVQRAASHYGIPTGTLYGRCKREGIELSRANPTPWSENAMVEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCNQQQDLQKCQETERHIQDISEYQQTQAHIPHPSSVHEEGLTHAHLHAHSHFAVAQQYIHQDTSTVHDYGQGLFFNQNFSSILTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -