Spla002736.1
Basic Information
- Insect
- Salpingus planirostris
- Gene Symbol
- -
- Assembly
- GCA_949788335.1
- Location
- OX460918.1:3099948-3112781[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.048 3.9 8.1 0.6 2 20 422 440 421 444 0.90 2 12 0.0042 0.34 11.4 2.9 1 23 453 476 453 476 0.95 3 12 0.048 3.9 8.1 0.6 2 20 847 865 846 869 0.90 4 12 0.0042 0.34 11.4 2.9 1 23 878 901 878 901 0.95 5 12 0.01 0.86 10.2 0.6 1 23 910 932 910 932 0.95 6 12 2.4 2e+02 2.7 0.6 1 20 941 960 941 961 0.94 7 12 0.26 21 5.8 1.1 3 23 975 996 975 996 0.91 8 12 6.3 5.2e+02 1.4 2.2 1 23 1005 1028 1005 1028 0.90 9 12 0.016 1.3 9.6 1.3 3 23 1037 1058 1036 1058 0.97 10 12 2.7 2.2e+02 2.6 1.2 1 23 1072 1095 1072 1095 0.90 11 12 0.042 3.4 8.3 1.2 2 23 1105 1127 1104 1127 0.90 12 12 0.36 30 5.3 0.5 1 21 1136 1156 1136 1159 0.89
Sequence Information
- Coding Sequence
- ATGTCCAATAATAATCCCCGGTCCGATGCGTCTTCATCATACTTAAGTCGTTTAGATTCGAGCGATTTGAAGAGTTTGAAAGTGGCCATAAGAAGACACAACATACCAGCGCCAGAAGCACCCACACCTTTACTGAGGAGTCTTGATGACCCCTCACTACTTACCGTACATTATAGACCGgATGAAGGTCTCCGCCCGATTTTCGACCGCGACGACGTCATCGTGAACCAACGGGAAAAAGTCAACGAAGAGCGCGTCATTTTGACGTCACCGAACCGAACCCAAACGTCACCGAGCACATCACGATCGAGATCCCCTCTGACGGATAGcaggagaaataaaaaacgacAAACGCCCCCCAGAAGGTCGAGCCCGAAAAGAGAACCACCGAAAACCAAATACAAAGAGGACTACTATAAGTGTAGTGGCAACAGAAGTGGGCGGAGCCGGTCGAAATCGCCGGCCCAATCGCGAGCGAGGACGAAAAGCGGCGCCCCGTCGGCAGCGCCATCTACCTCGAAGTCGCGCCGTTATAGTCGCTCCCCGCACAATTACGGTGACGTCAAGAGGCGAAAATCGCGCAGTCTGAGCCCGCCGAGACGCGATCGCGAAATAAGCAGATCCCCGCGCCCCAGCAAAGACAGGAGGCGGTATTACTCGAGGTCGCCCGTCAAATATCGGCCGCCATTGCCGAGTGACAGGAGGCGTTCGAAGTCGCCAGCGCCATCTACCTCAAGGCGCAGCAGAAGTCGGTCCCCCTATCGCGAGAGACGTCACTCGAGTAGGTCCCCTCGCAGGACGTCATCGGCGCACGATTACCGGAAATATGACGGTTCTTCGCGCCATCACAGTCGGTCGCCCGGGAGGATTTATCGACGATATTCGCCCGACAGGAGGGTCAGCAGGAGGGGCAGTAGGTCGCCTCCCCCGAAAAGAGACGAGCGGAGTTACGTCGAGGCGCCGCTGATTCCCGAAATTCAATATTATGAGGGGGATGAGTTTTGGATTCCGGGACCGCTGCAGCCTCGTTACATCCCGGGTAGGTTCGTACCGCCACCGGGGGCCTTTCCGCGCGGGATTCCAGGGCCGGTTCTGATGCCCCGCATACCGGTCATGGTGCCGCCACTGTTCCGACCGAGGTATCCGATTTACAATTCGAAACTTTTGAGGCCTCCTAAGACAAGAACCGAAATAGAACACCAACTCGAACTCGATTCAGTTGCAGATACTAAATACGGGAGGAGGAGCAAAGTGAAGTCCGTCCAATGCGAACGGTGCAACTTCCGGACGGACACTGCCGCCAACCTGAAAAAGCACAACGTCTACCAGCACTCGCCGGCGGAAGACACGAAATGGCACGAATGCACCGAGTGCCAGTACAAGGCGAAGAAAGCGACGAACTTGAAGAGGCACATTTACAGCCGCCACACCGCCCCCGACCAGATCGAGTGGTTCAAAATTGAGatgataatattttcaaaaaaatcggagtCCGACGACAAAGGGATCATACGAGCCGTTCCGGAGAGTTCCGAGCAGCCGATGCCGAAGGGAGAAGCCGAGTCGTTCCGGAGAGAGTCGAAAGGGACGCTAGTACTTGAAATGGGGGAAAAGTACCGAAGACGCCGAATAGACGCCAGGATCGGGTATAGAAGCCGCCGCTGTTGGGGGCTGAAGTGTAGTGGCAACAGAAGTGGGCGGAGCAGGTCGAAATCGCCGGCCCAATCGCGAGCGAGGACGAAAAGCGGCGCCCCGTCGGCAGCGCCATCTACCTCGAAGTCGCGCCGTTATAGTCGCTCCCCGCACAATTACGGTGACGTCAAGAGGCGAAAATCGCGCAGTCTGAGCCCGCCGAGACGCGATCGCGAAATAAGCAGATCCCCGCGCCCCAGCAAAGACAGGAGGCGGTATTACTCGAGGTCGCCCGTCAAATATCGGCCGCCATTGCCGAGTGACAGGAGGCGTTCGAAGTCGCCAGCGCCATCTACCTCCAGGCGCAGCAGAAGTCGGTCCCCCTATCGCGAGAGACGTCACTCGAGTAGGTCCCCTCGCAGGACGTCATCGGCGCACGATTACCAAAAATATGACGGTTCTTCGCGCCATCACAGTCGGTCGCCCGGGAGGATTTATCGACGATATTCGCCCGACAGGAGGGTCAGCAGGAGGGGCAGTAGGTCGCCTCCCCCGAAAAGAGACGAGCGGAGTTACGTCGAGGCGCCGCTGATTCCCGAAATTCAATATTATGAGGGGGATGAGTTTTGGATTCCGGGGCCGTTGCAGCCCAGTTACATCCCGGGTAGGTTCGTACCGCCACGGGGGGCCTTTCCGCGCGGGATTCCAGGGCCGGTTCTGATGCCCCCCCATCGGTATGACCGGCATGACCGGTGTCATGGTGCCGCCACTTTCTGGCCGAGGTATCCGATTTACAAATCGAAACTTCTGAGGCCTCCTGAGACAAGAACCGAAATAGAACACCAACTCGAACTCGATTCAGTTGCAGATACTAAATACGGGAGGAGGAGCAAAGTGAAGTCCGTCCAATGCGAACGGTGCAACTTCCGGACGGACACTGCCGCCAACCTGAAAAAGCACAACGTCTACCAGCACTCGCCGGCGGAAGACACGAAATGGCACGAATGCACCGAGTGCCAGTACAAGGCGAAGAAAGCGACGAACTTGAAGAGGCACATTTACAGCCGCCACACCGCCCCCGACCAGATCGAGTGGTTCGAATGCCCCGACTGCCCGTACAAGGGCAAAACGAAACGCGACTTCGTCTCGCACTCGCTCCAGCACACCAGCGAGAACGACATCAGGTGGTTCCGGTGTCAAACGTGCGCCTTCAAGACGAAAAAAGAGAACTACCTGAGAGAGCACGTGATCTGCAAGCACACCGACTCGAGCGAGATCGAGTGGCAGGGCTGCCAACTGTGCCCGTATAAAACGAAATCGAGAGAGACTTTACGCATCCACAATCTGTACAAGCACACCGAGGCGGACAAGATCAAGTGGTACCGCTGCGATTCGTGCGTTTTCAAGGCGCGCACCGGGAAAGACCTGAAACGGCACAAATTCCAGAGGCACGAACTGAGGTTCGATTGGGTCGACTGCCCGAGTTGCCCCTACAAAGGGAAAAGCGTGAAACACCTCCGTCGGCATCTGCTGACGATGCACGACGCCACTTCCAATAACGACGAGGGTAGCGTGAAGAAGTTCCTGTGCGGTTTTTGCGAGTTCCGGGCGAGGACGCGTTGGGCCCTCAAGGAGCACGTGCTGCACCGGCACACCCCCGCCGACGAGATCCAGTGGTGGACGTGCCGCTACTGTCAGTACAAGGGCAAGTCGAAGAACAACCTCAAGGACCACGTGGTCAACAGGCATCCGGACGAGGAGGAGGCGAACGCGTTCGCCTGTCAGGAGTGCGATTTTCGCGCCAAGAACGAGCGAACGCTGCACGAGCATCTGGTCGACGTGCACGCGAACTTGGCCGACTGCCGGTCGGGCGGCCTCGCCGGTGACGTCAGCGACTGTCAATCAGACGATGGCGATTACGGATTCTGTTGA
- Protein Sequence
- MSNNNPRSDASSSYLSRLDSSDLKSLKVAIRRHNIPAPEAPTPLLRSLDDPSLLTVHYRPDEGLRPIFDRDDVIVNQREKVNEERVILTSPNRTQTSPSTSRSRSPLTDSRRNKKRQTPPRRSSPKREPPKTKYKEDYYKCSGNRSGRSRSKSPAQSRARTKSGAPSAAPSTSKSRRYSRSPHNYGDVKRRKSRSLSPPRRDREISRSPRPSKDRRRYYSRSPVKYRPPLPSDRRRSKSPAPSTSRRSRSRSPYRERRHSSRSPRRTSSAHDYRKYDGSSRHHSRSPGRIYRRYSPDRRVSRRGSRSPPPKRDERSYVEAPLIPEIQYYEGDEFWIPGPLQPRYIPGRFVPPPGAFPRGIPGPVLMPRIPVMVPPLFRPRYPIYNSKLLRPPKTRTEIEHQLELDSVADTKYGRRSKVKSVQCERCNFRTDTAANLKKHNVYQHSPAEDTKWHECTECQYKAKKATNLKRHIYSRHTAPDQIEWFKIEMIIFSKKSESDDKGIIRAVPESSEQPMPKGEAESFRRESKGTLVLEMGEKYRRRRIDARIGYRSRRCWGLKCSGNRSGRSRSKSPAQSRARTKSGAPSAAPSTSKSRRYSRSPHNYGDVKRRKSRSLSPPRRDREISRSPRPSKDRRRYYSRSPVKYRPPLPSDRRRSKSPAPSTSRRSRSRSPYRERRHSSRSPRRTSSAHDYQKYDGSSRHHSRSPGRIYRRYSPDRRVSRRGSRSPPPKRDERSYVEAPLIPEIQYYEGDEFWIPGPLQPSYIPGRFVPPRGAFPRGIPGPVLMPPHRYDRHDRCHGAATFWPRYPIYKSKLLRPPETRTEIEHQLELDSVADTKYGRRSKVKSVQCERCNFRTDTAANLKKHNVYQHSPAEDTKWHECTECQYKAKKATNLKRHIYSRHTAPDQIEWFECPDCPYKGKTKRDFVSHSLQHTSENDIRWFRCQTCAFKTKKENYLREHVICKHTDSSEIEWQGCQLCPYKTKSRETLRIHNLYKHTEADKIKWYRCDSCVFKARTGKDLKRHKFQRHELRFDWVDCPSCPYKGKSVKHLRRHLLTMHDATSNNDEGSVKKFLCGFCEFRARTRWALKEHVLHRHTPADEIQWWTCRYCQYKGKSKNNLKDHVVNRHPDEEEANAFACQECDFRAKNERTLHEHLVDVHANLADCRSGGLAGDVSDCQSDDGDYGFC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -