Spla015157.1
Basic Information
- Insect
- Salpingus planirostris
- Gene Symbol
- L
- Assembly
- GCA_949788335.1
- Location
- OX460929.1:3851784-3857021[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.081 6.6 7.4 4.8 1 23 85 107 85 107 0.97 2 19 8.3e-07 6.8e-05 23.1 3.2 1 23 113 135 113 135 0.99 3 19 0.00012 0.01 16.2 0.3 1 23 141 163 141 163 0.99 4 19 0.00014 0.012 16.1 0.2 1 23 185 208 185 208 0.95 5 19 0.0047 0.39 11.3 0.1 3 23 236 257 234 257 0.95 6 19 0.0022 0.18 12.3 1.0 1 23 285 308 285 308 0.96 7 19 0.0027 0.22 12.0 0.7 3 23 446 467 444 467 0.88 8 19 0.0033 0.27 11.8 1.1 1 23 472 495 472 495 0.92 9 19 0.00025 0.02 15.3 2.4 1 23 560 583 560 583 0.97 10 19 6.7 5.5e+02 1.3 2.5 1 23 623 646 623 647 0.77 11 19 0.00017 0.014 15.8 2.7 2 23 658 679 657 679 0.97 12 19 0.0013 0.1 13.1 0.6 1 23 688 710 688 710 0.98 13 19 9.2 7.5e+02 0.9 0.8 3 23 719 739 718 739 0.94 14 19 0.22 18 6.0 0.3 3 16 787 800 785 802 0.89 15 19 0.0076 0.63 10.6 0.1 1 23 839 861 839 861 0.95 16 19 0.0025 0.2 12.1 0.2 2 23 870 891 869 891 0.95 17 19 0.054 4.5 7.9 0.0 1 23 899 921 899 921 0.95 18 19 0.023 1.9 9.1 1.6 1 23 928 950 928 950 0.97 19 19 1.9 1.6e+02 3.0 0.6 2 21 989 1008 988 1009 0.90
Sequence Information
- Coding Sequence
- ATGTTGTTTAAAGGAAACAGCAGCCGACTGGAGCTTTTGATCGAGAAAATACAATCCAATAAAGACCACGGTGATTTCAAGCCGCCCCCAGTTATGGAAGATGAGACCGCGGCCAGTTCGGGTTCCGGGGGCTCGGCTTCTGGAGAGACCGTCCACGGTTACGACGAGCTCGTCCATCAGGGGTCAGTTCATGAAGATCAAGATACGAAATCCGGTCCTTATAAATGCACGACTCACACGGACCATCTTCAGTTCACTTGTGCTTATTGCCCCCGACTCTTCAAACATAAGCGATCGAGGGATCGCCACACTAAGCTACACACCGGCGACAAAAAGTACAAGTGTCAACAGTGCGACTCCGCTTTTTCCAGGAGTGATCATCTAAAAATCCACATGAAAACACACGATAGTCGTAAACCGTACAAATGCGGCACGTGCAACAGAGGCTATAATACGGCGGCGGCGCTCTCGTCCCACCAGCAGAGCCAtttaaaacaggaatctaggtCTGGAAGCCGCACAAGCGGCGGAAGCACCCCCAGTCCCGGACTTTTCAGGTGCAGCCAGTGCAGCGAAACTTTCGGCAAAGCCGACCTCCTCCAAAATCACATGGCGCTGATCCACAGCGACACCGACTCGTCTTTGAGCCAAACCCCCGAACCGTCCTCCGAGTACCAATCGCAACTCGACGATTTGAAGATAATCTGCATGTACTGCTCGCGCGATTTCCCCACGCTCGACTCGCTGTACCAGCACACGAATATCGCGCACAAAGCGGTCGTCCATCACAACGGCCTTTCGGCCTCGGCCTCCCCGAAAGAGTTTTACCAGAACGGGGCGCCGACGCCGACCTACGCCTGCGACCGGTGCACCATGCACTTCGATTCGCCCCAAACTTTGAAAGACCATCTAAATTCGGTACACTGGAGGCCCGCCGTCTCCCCCAGCCCCAGCGTGCCGCAGAATTTCGGTCTGCCACCAGGGGTCGAGAAAACCTACCCGTCTTTCCAAACGCAGCCGACCGATCTGTCccggaagaagaagaaggacgAGGGGTGCCACAATAAAAGttggaagaagaagaagcaggACCATCCGCAGTCGCCGACGTTGAGTCCGTACGACTCGAACGACAAGCCGTGCATATGCTCGTGCTGCTACGCGCAGTTGCCGAACTTCAAGAGCTTCCTGCACCATATGGAAACGCACGTCGTGTCCTCGAACAATTCGCTGTTGGGGTTCTGCCCGGTCTGCGGCGAGCCCGGACGCGGCGACCCGGTCTCCTTCACGAACCACATTTTCAGCCACGCGATCGCGCAAGTGCCCGGCCGCTGCTGCTACGCCTGCAAGAAGCCCTTCGAGAGGGCCGAAGACCTGCAGAGGCACCTCATCGACGTGCACGCCGCCACCGTCTACAAATGCTCAATCTGCAACGAGATCTTCGACACGAAGATTTCAATGCAAATGCACTTCTCCAATAAGCACAGCGACGAATGCAAACATTACAAATGTTATCTGTGCACTGATCAGATTTTCCACGACCAACTTTCCGCCGAACTCCATATCTCCATGAAACACTACAATCAATACGCTCCTTGCATGAGTTCTAATCAGTTATTGTCGAGGCCCCAATACCAAATGGAAATGGATGCGCGATTGAGGGACTACAATATGGTATTCCAATGCTCGTTTTGCCAAAAGTCTTTTAAAGATCAGTACTCTCAATACGTTCACATCTTAAAAGAACACAGCGAAACTAAAGAAGGGGAGAAATTCGCCTTGGAGCACTCGCAAAATCCGTCCGCGATGTTCCCGTCACCGTCGGACACGACCGCCAAGCTCGACAATAAGACCGCCGAGACGAGCTTCACTTGTGATATCTGCAATCGGAACGACATAACGTCCGAATCCGACCTGCTGACCCATAAAAAGCTGCACCACGCCAAGAGCAAAGTGGGCCCGGTGAGCTTACAGTGCGCCTACTGCAACGAGTACTGCAAGTCGCGGACCGACCTGGAGAACCACATGAAGACCCACCAGGTAACCTGCGGAAAGGGCAAGCACAAGTGCAACATCTGCGACGAGATATTCGCGTCGACCCTCACATTGGCCGACCACAAGTTGACCCACTGCAAGATCGTCGAAGGCAACAACTGCGTCCAGTGCAAATCGGTACTCACCGACGAGCAGTCCTTCTACACCCATCAGTACCAACACAGCAGCAGCCCTTCTAAGCCCAACTCCCAGATCTGCCTACCTGCTAACTGCATAATCTGCTGCCAGACTTTGCAGACGGACGTCGAGGTGAAACTTCACTCGAAGTTCCACTTGAAGCACCTGACGCAAAAGGAGTGTCTGTGCGGTGTTTGCAACAAAGTTTTCGACACGCAGACTGGATTGGTGGTCGACCGCCCCCCGGATAATCTGAGTGTCTTCCTGTGCAAGGACTGCGGCGACAAGGGCGGCAGTGCCGAGTGCGACATCACGAAGGTGTCGAACCCTGCCGGTAAGCAGTTCGCCTGCGTCCAGTGCAACCAGACGTTCGACAGCGAGGGCGACGTGAAGAAGCACGCGGCCGTCCACGTCCTCAACGAGGGTACCAACATCGAGTGCCGGCTCTGTAAGCAGGTCTTCTCCTCCCCCCTCAAGCTGCAGACGCACCTGATCGAGCACAACTTTTACGGGATGAACCAGTACAGCTGCTACGTCTGCTCCTCGGTGTTCACGGCTGCCGGTGGGTTGCAGAGCCACATAGTAGGTCATGGCTTGGACAGCCGGCCCTACGAGTGCTCGCAGTGCCAGATGAAGTTCTTCTTCCGGGCCGAGCTGGACAACCACCGGTTCGTGCACATGAGCGTCGCGCTGCTGTCGCCGCAACGCgcaggcgtcgcgacgccccaGTCGTACCAGATGAACGGGGCGGTCGACGGGCTATACGAGGGTAAGCGGAACCACCAGTACAAGGTCTGCAAGTACTGCTCGAACTCGTTCTTGGACAACTCCTTCTTCTTGGAGCACCTGAACCAGTGCCCGTTCCGGATAAGTCCGAAGCAGGAATTGATCATCGAACCCAACGGGAATAACGAGGTAGACAATAATATTAAACAGGAAGTTACGGAGATCACCTCCGAGATTATAATCGAAAAGGAAGAGCAATAA
- Protein Sequence
- MLFKGNSSRLELLIEKIQSNKDHGDFKPPPVMEDETAASSGSGGSASGETVHGYDELVHQGSVHEDQDTKSGPYKCTTHTDHLQFTCAYCPRLFKHKRSRDRHTKLHTGDKKYKCQQCDSAFSRSDHLKIHMKTHDSRKPYKCGTCNRGYNTAAALSSHQQSHLKQESRSGSRTSGGSTPSPGLFRCSQCSETFGKADLLQNHMALIHSDTDSSLSQTPEPSSEYQSQLDDLKIICMYCSRDFPTLDSLYQHTNIAHKAVVHHNGLSASASPKEFYQNGAPTPTYACDRCTMHFDSPQTLKDHLNSVHWRPAVSPSPSVPQNFGLPPGVEKTYPSFQTQPTDLSRKKKKDEGCHNKSWKKKKQDHPQSPTLSPYDSNDKPCICSCCYAQLPNFKSFLHHMETHVVSSNNSLLGFCPVCGEPGRGDPVSFTNHIFSHAIAQVPGRCCYACKKPFERAEDLQRHLIDVHAATVYKCSICNEIFDTKISMQMHFSNKHSDECKHYKCYLCTDQIFHDQLSAELHISMKHYNQYAPCMSSNQLLSRPQYQMEMDARLRDYNMVFQCSFCQKSFKDQYSQYVHILKEHSETKEGEKFALEHSQNPSAMFPSPSDTTAKLDNKTAETSFTCDICNRNDITSESDLLTHKKLHHAKSKVGPVSLQCAYCNEYCKSRTDLENHMKTHQVTCGKGKHKCNICDEIFASTLTLADHKLTHCKIVEGNNCVQCKSVLTDEQSFYTHQYQHSSSPSKPNSQICLPANCIICCQTLQTDVEVKLHSKFHLKHLTQKECLCGVCNKVFDTQTGLVVDRPPDNLSVFLCKDCGDKGGSAECDITKVSNPAGKQFACVQCNQTFDSEGDVKKHAAVHVLNEGTNIECRLCKQVFSSPLKLQTHLIEHNFYGMNQYSCYVCSSVFTAAGGLQSHIVGHGLDSRPYECSQCQMKFFFRAELDNHRFVHMSVALLSPQRAGVATPQSYQMNGAVDGLYEGKRNHQYKVCKYCSNSFLDNSFFLEHLNQCPFRISPKQELIIEPNGNNEVDNNIKQEVTEITSEIIIEKEEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -