Spla008233.1
Basic Information
- Insect
- Salpingus planirostris
- Gene Symbol
- prdm10
- Assembly
- GCA_949788335.1
- Location
- OX460922.1:4083812-4088313[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00052 0.042 14.3 0.3 1 23 443 465 443 465 0.99 2 13 1.3 1.1e+02 3.5 0.1 2 16 497 511 496 521 0.90 3 13 0.0028 0.23 12.0 1.6 2 23 541 562 540 562 0.93 4 13 5.9e-05 0.0048 17.3 0.2 1 23 573 595 573 595 0.97 5 13 7.8e-06 0.00064 20.0 3.5 1 23 606 628 606 628 0.98 6 13 0.00087 0.071 13.6 1.1 2 23 637 658 636 658 0.97 7 13 0.014 1.2 9.7 0.7 1 20 665 684 665 687 0.91 8 13 0.0015 0.13 12.8 2.1 1 23 693 716 693 716 0.95 9 13 0.00066 0.054 13.9 3.5 1 23 721 743 721 743 0.97 10 13 0.00092 0.075 13.5 4.0 1 23 749 772 749 772 0.89 11 13 0.0019 0.16 12.5 1.7 1 23 809 832 809 832 0.97 12 13 0.0005 0.041 14.3 3.9 1 23 854 877 854 877 0.97 13 13 0.0011 0.087 13.3 3.5 2 23 916 938 915 938 0.96
Sequence Information
- Coding Sequence
- ATGGATACGATAGTGGAAGGGCCCGCAGAAGATGGGGCCCAAGACCTGAACCTGGTCGACGCGACCGAATGGGTCACCCAGAACTCCCAAGGGATCGTAAACAACACGTTTCTCTACATCGCAGTGGAGTACGTCAAAGATGAGTACAAAATGGACGAGGCGCAAACGGCCGCCCTGGTCCGGCACACCGAAAACGACACTTACGCCACCAATTTCGAACAACACGTCAGCCCCTTGGACCCCAACATGAGCTCGGTGGCGCGGTACAGCCCCGTGTACAGCGAACCCTCGACGGAGTTCAACCCCATCGTCATCCACCAACTCGTGCAGCCCGACTCGACCGCGCCTAACGAACTCATCAACTTGACCCCGAATTCACCGCTTCCGGTATTGTGCAATAACGACATACGAGAGGTCGAAAACCAGTTTCTTCACATGGGCCCGCAAGAAGATGGCAATCAAACCCAACCCGGATTGCTGGTGACGGACGGTTCCGACCAATCACAAGCGGTGGAATTGTTGATAACCGATCAGGAAACCGGGATTTCTTACAGCGTACGGTCTCAGGAGTTCCTGGTGGAGCGCTGCTTGGAAGACGAGCAATTGCTTAGCGCTTTGGCCCCCGATCCGTTGCTCGAATCCGATTTGCTTACTTTGGACGATAATACGCTTAAATCGGAGCTCAACGATGATATTATCAATTCGGCGGTGGACACTGCCGCTGTGAATAATTACATATCAAGTTTAGACGATTTAAAGGCCTCTGTCGATAATGACGGTGGCGCTTGTAACTATAAGATAGAAACGAGACTTCAGGCTAGGAATAATGAAGCGGAATTCGACGATCAAATACTGTCGCGAGTTTATAATATTGTTGATAAACCTGTCCCGACAAGGGCCAGGGCCTCCTTACCAGAGGCGTACTTGATCATTAATAAAATAGAAGATGACGTTTGTGGAGTGTTTGCGAAGAAATCCATTCCGAAATGGACGCAATTTGGGCCTCTGACTGGGATATTTGTTCCTAACGTTAACAAGATCATCAAAGACGATTCGGTTTCTCTTTTGTATATTTTGGAGGACGAAAACGGAGTTATGAACGAAATCGACGTCTCTGATGAAAATGTAGCCAATTGGATGAGTTTCGTGCGTCGCGCTTTGTCTTACAAGGAGGAGAATTTGATAATGAGCCAGGAAGGCACCGACTTGTATTTCACGTCCACCCGGAACATTTCGCCTAAAGAAGAGCTTAAAGTCGGTTACGCTTTGTCGTACGCCAAACGTTTTCAGTTACCGTTTTTGGAACCCACCGAGGACGATAAAGAATACAAGTGCTTTTTGTGCCCTCAGGCTTTTTTGCAATCGGACGAACTGCAACAACATTTGAATGTTCACGACGAAAAAGATGAGAATTTGAATCCTCGgaagaaattactgaaaagtTTGAATAACATAAAGCAAAAGATCGTCAAAAACAACGAGTCGGTTCGATGTAATAACTGCAATGACGTGTTCACTCAACCGGGAAAGCTCGCTTTACGCAGCCATTTGATCGAGAAGCATTCGATAAGTCGGTTCGATAACAATCTCGAGGACTATTTCACCTCGGTTAGGAGTTGCAAGTGCAGTAATTGCGACTACGTTTTCGATAATGAAGCTTTGTTGAAAATCCATAATTATTCCCACGAATCGGACAATTCCGATGAGCAGACCAATCACGTCTGTCCGGGCTGTCAACGAAAATATCCGACCCAACGTCAACTGGTCGCTCACGTCGCGACCCATTCGGCGGGCTGGAAACCGCATCCGGTTCCTTTCAAGTGCACCGTCTGCCATAAATTGTTCTCGCAATCCGATAGGCTCAGACGTCACATGTTGGTGCACGGCTCGGAAGACTCGAAGCCTCTTCAGTGTAAAACCTGCAAGAAACGTTTCCTGAACAATTCGGCACTAGCGGGCCATTTAAAAACGCATTTCGCCGGCAAAAAAATCTTCGAGTGTCCGATCTGCAAAGAAAGCTTCGATCATGTACTCAAGCTGAAATTGCACGTGCCGAAGCACTGCGAGAACAGCAGCTACGCGTGCCCTCACTGCACGAAAGTCTTCAAAAAGTACAGCATCATCCGGAAGCACATAAGGGCGTTCCACTGCGACCAGAAGCACTCGTGCCCCCACTGCTCGAAACTGTTCCCGACTCTGGATAAATTGAAAATGCATCTGTTGCGACACTCGGATCACAGGGAGTTCCTGTGCGCCGATTGCGGCAAACAATTCAAGCGGAAAGATAAGTTGAAGGAGCACTGCAAGCGGATGCACTCGGAGGAGAGGGAAAACGACGCCCCGAAACCCCAGAAGACTTCAACCGTCAAACCGATGAAGAAACTGAGCCCCCGTGCTGAACCGACCGATTTCCATCGGTTTATATACAAGTGTCACACGTGTTTGGTCGGTTTCAAGAGGAGGGGGATGTTGGTCAATCATTTGGCGAAGAGGCACCCGGATATTCCCCCGGATTCTGTCCCGGAACTGAATTTGCCCATCCTGCAGACGACCAGGGATTACTACTGTCAGCATTGCGAAAAAGTCTACAAGAGTAGCTCGAAGAGGAAGGCGCACATTTTGAAGAACCATCCGGGGGCCGCCCTGCCGATGAGCAATAGGAAGCAGAGCTCCTTCTCGGAGGGAGGGAATCTGCCGAATCCGACCTACTCGCAAACTGTCGGCAGTATAACTACCAGGCCGCAAAGTTGCACTTGGTGCCATAAGCAGTACGCTAGTAAGGCGAAATTGTTGCAGCATCAGAGGAAGAAGCACACGAGTGAACTGGCCAATCAGAAGTCGGATGATAATCACAAAGACGACGATCCGTTGTCGGATCACAACAGCGAGCCGAAGGACGGTGGGGATGATGATAAAATCTGCGTCCAGGACGATTACAAGGTCTCGGATGACGATCTCTTGAACGGGGCGTTGGAGGAGTACGCGAATGAGCGCGGCGGGAAGGATCAGTTCTGTCATCTGGTGGCAATCGCAGAATCGGAGAGTTTCGGACAAAATGGAGACTTGGGAGGTGCAAACACGCATTTGTACCGCCTCTTGACTACGGCAAGCAGTGATATGGTGCCACCACGTTGA
- Protein Sequence
- MDTIVEGPAEDGAQDLNLVDATEWVTQNSQGIVNNTFLYIAVEYVKDEYKMDEAQTAALVRHTENDTYATNFEQHVSPLDPNMSSVARYSPVYSEPSTEFNPIVIHQLVQPDSTAPNELINLTPNSPLPVLCNNDIREVENQFLHMGPQEDGNQTQPGLLVTDGSDQSQAVELLITDQETGISYSVRSQEFLVERCLEDEQLLSALAPDPLLESDLLTLDDNTLKSELNDDIINSAVDTAAVNNYISSLDDLKASVDNDGGACNYKIETRLQARNNEAEFDDQILSRVYNIVDKPVPTRARASLPEAYLIINKIEDDVCGVFAKKSIPKWTQFGPLTGIFVPNVNKIIKDDSVSLLYILEDENGVMNEIDVSDENVANWMSFVRRALSYKEENLIMSQEGTDLYFTSTRNISPKEELKVGYALSYAKRFQLPFLEPTEDDKEYKCFLCPQAFLQSDELQQHLNVHDEKDENLNPRKKLLKSLNNIKQKIVKNNESVRCNNCNDVFTQPGKLALRSHLIEKHSISRFDNNLEDYFTSVRSCKCSNCDYVFDNEALLKIHNYSHESDNSDEQTNHVCPGCQRKYPTQRQLVAHVATHSAGWKPHPVPFKCTVCHKLFSQSDRLRRHMLVHGSEDSKPLQCKTCKKRFLNNSALAGHLKTHFAGKKIFECPICKESFDHVLKLKLHVPKHCENSSYACPHCTKVFKKYSIIRKHIRAFHCDQKHSCPHCSKLFPTLDKLKMHLLRHSDHREFLCADCGKQFKRKDKLKEHCKRMHSEERENDAPKPQKTSTVKPMKKLSPRAEPTDFHRFIYKCHTCLVGFKRRGMLVNHLAKRHPDIPPDSVPELNLPILQTTRDYYCQHCEKVYKSSSKRKAHILKNHPGAALPMSNRKQSSFSEGGNLPNPTYSQTVGSITTRPQSCTWCHKQYASKAKLLQHQRKKHTSELANQKSDDNHKDDDPLSDHNSEPKDGGDDDKICVQDDYKVSDDDLLNGALEEYANERGGKDQFCHLVAIAESESFGQNGDLGGANTHLYRLLTTASSDMVPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -