Basic Information

Insect: Salpingus planirostris
Gene Symbol: RREB1
Assembly: GCA_949788335.1
Location: OX460923.1:3788720-3794662[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.9e-06 0.00032 21.0 1.0 1 23 93 115 93 115 0.99

2 16 0.00022 0.018 15.5 0.4 1 23 127 149 127 149 0.98

3 16 4.7e-05 0.0038 17.6 6.4 1 23 155 177 155 177 0.98

4 16 2.5 2e+02 2.7 0.1 1 8 247 254 247 268 0.93

5 16 0.0024 0.2 12.2 1.2 2 23 277 299 277 299 0.97

6 16 0.27 23 5.7 1.0 1 21 345 365 345 366 0.93

7 16 0.056 4.6 7.9 0.1 1 23 506 528 506 528 0.96

8 16 2.6e-06 0.00022 21.5 0.5 1 23 537 559 537 559 0.99

9 16 0.0011 0.09 13.2 2.3 1 23 565 588 565 588 0.97

10 16 0.00038 0.031 14.7 3.0 1 23 993 1016 993 1016 0.97

11 16 3.4e-05 0.0028 18.0 0.4 2 23 1243 1264 1242 1264 0.97

12 16 0.097 8 7.1 6.3 1 23 1270 1293 1270 1293 0.97

13 16 0.033 2.7 8.6 1.1 1 20 1321 1341 1321 1342 0.94

14 16 0.016 1.3 9.6 0.7 1 23 1406 1429 1406 1429 0.95

15 16 0.013 1.1 9.9 0.4 3 23 1476 1496 1474 1496 0.93

16 16 0.0058 0.48 11.0 5.9 1 23 1502 1524 1502 1524 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.9e-06	0.00032	21.0	1.0	1	23	93	115	93	115	0.99
2	16	0.00022	0.018	15.5	0.4	1	23	127	149	127	149	0.98
3	16	4.7e-05	0.0038	17.6	6.4	1	23	155	177	155	177	0.98
4	16	2.5	2e+02	2.7	0.1	1	8	247	254	247	268	0.93
5	16	0.0024	0.2	12.2	1.2	2	23	277	299	277	299	0.97
6	16	0.27	23	5.7	1.0	1	21	345	365	345	366	0.93
7	16	0.056	4.6	7.9	0.1	1	23	506	528	506	528	0.96
8	16	2.6e-06	0.00022	21.5	0.5	1	23	537	559	537	559	0.99
9	16	0.0011	0.09	13.2	2.3	1	23	565	588	565	588	0.97
10	16	0.00038	0.031	14.7	3.0	1	23	993	1016	993	1016	0.97
11	16	3.4e-05	0.0028	18.0	0.4	2	23	1243	1264	1242	1264	0.97
12	16	0.097	8	7.1	6.3	1	23	1270	1293	1270	1293	0.97
13	16	0.033	2.7	8.6	1.1	1	20	1321	1341	1321	1342	0.94
14	16	0.016	1.3	9.6	0.7	1	23	1406	1429	1406	1429	0.95
15	16	0.013	1.1	9.9	0.4	3	23	1476	1496	1474	1496	0.93
16	16	0.0058	0.48	11.0	5.9	1	23	1502	1524	1502	1524	0.98

Sequence Information

Coding Sequence: ATGCAAGGCGTTGTCTTCATGCCCCAGAATCCTCAGCAGGGCTCGCCGCCACCAAACAACACCATAGTTACCGATTTTACCATGGAGAGATCCCCCGAACCGAACCACGCCGTCATCACCAAAGACAAAGCCGCCAATAACCGAAGCGCCGTCAGCAGAGAGAGCGACTCGGGCATCTTCTCGACCACCGAGCCGCTCGACGCCTCCACCCGGACGACCTCTTCGGAGAACTGCGACACCGACAACCGCAGCGACTGCAGCTCGCCCGAAAGAAAGTACGTGTGCCCGATCTGCGACAAGATGCTGACGTCCCAGCACGACTTCACGCTGCACATCCGGTCGCACAACAACGAGACCGAGATCCAGGACGAGAAGGGCTTCACGTGCCGGATCTGCCGGAAAGTGCTGAGCTCCAGCTCCAGTCTGGACCGCCACGTGCTGGTGCACAGCGGCGAGCGCCCGTTCCACTGCAAGTACTGCGGCGACACCTTCACCACGAACGGCAACATGCACCGCCACATGCGGACCCACTCGAACCACAAGGCCGAGAACTACGAGTCGGACGGCAGCGTCGACAGCAACGTCAGCTCCAGCTCCAAGAGCATCGAgtacaacaacaacaagatCGACTCCAAGTTCGGGGTCAAGCGGAAGCTCGACGAGTGCCACCAGCCCCCCGGCAAGCGCCAAGAGACGGGCTCGAGCGACTCGGAGGGCCACCTTCACAATCGCCGGGCCTACAAGTGCCCCGTCTGCGACAGAAACGACTTCGACTCTCTCCTGGTCCTGGAGACTCATCTGGAGGACAACCACCCGGACTACCCGGCCAAGTGCAACCAATGCAACCAAATCTTCCAAAACAACAAGCTCCTGTCGGCCCACCGCAGTACCGTCCACGAAAGTAGCGTGACCAAGCACCACGTGACCGGCTTCAACGATCTGACGTTCGTCGACTTCTCCAGCGAGAAGTTCCCTCATATCGCGCGCTACGAATGCGAGAGGAAGCTTCACAAAGTGGCCGGCGGGCTGAAATTCCAATGCAAAAGGTGCTCGCGGGCGTTCCCCTGCTCGAATTCGCTCGAAATCCACGAAAGAGACTGCCTGGCGCACCAACCGAACGGTCTGGACTTGTCCAGGCCGGCAGCCCGGATTTCCGAAAACGAAATCAGGAGGAGCGAGTTCTTCTCGAGACTCAATCTCCAAGACAACTCACCTGAGAAATTCGCCCCACCTCATCATCTACTGAGCGACACCTCGGCCAAATTGCGGCAGCAACTCATATCGAAAGCCATTAGGCCTATCGACCAGACTAAAGACCTCGCGGATATCCAGTCGATCATCTCCATGACCAGTAACGGGAGTCTCCTCCAGCAACTCCAAGCCAAAAGCGATATGGGTCTCAACCAGAAGCCGCTGGGAGATATGAGCAACGACTCGATGGGCCACTGCGAGCAGGAGGAGGAAAGTCAGGATATTTTCGCGGTAGAGTTCAGGAAGATGAAACTTCGAGGTGAATTCCCCTGCCGCTTGTGCACGGCAGTCTTCCCGAATTTGAGGGCGTTGAAAGGGCACAACCGCGCCCATCTCAACGGCAACAACAACGGGATGTACCGCTGCAACATGTGCCCGTACTCGTCCATCGATAAGGCCACCCTGATAAGACATATGCGTACTCACAACGGCGATCGTCCATACGAATGCGCCCTTTGCAATTACGCGTTCACGACCAAGGCGAATTGCGAGAGGCATCTGAGAAACAGGCACGCGAAAAAAACGCGCGAGGAGGTGAAAAAGTCGATCATTTACCACCCGTCCGAAGATCCGACCAACGAGGACCTCAACAAACTCACCCGGGACGACTTGAGGAAGCCCCTTCTGGACTCCGATATCATGCTGACTCCCGAGAGGGTGAATCGTTCGGTGACTCCGAAATTGGCCGACATGAGGGGCATCCTTCCGGAAATCGTCAAATCTGAAATGTCTCCCACTCTGATACCGACTCTGCTGAAAGACGTGCCTCTGGCGAAAGAGCCGCCGAAAATACTCTCGAATATCAACGAGATCATCAGGAACGAAAACTTGAGATCGTTGAAAGAGCACAACTTCCCTCACCAGAACGAGCCGCTGTCGCCGTATTTGCAACCGCAATACAATTTCGCGCCGAAACCCTCCAACATATCGACACCCCAGAATCTGACTTCGAAAATCCAAGTCAAGAGTTTGGAAGTCTTGAAGGAGAACTGCTACGACAGTCCATCGGATTCCGATAATGACCGTGATgaagacgacgatgacgatgaagaGGAGCCCGCCGTTTTAGACTTGAGTAAGAAAAAACACGAGGAGCCTATCAGGAGACTCAAAGACGAAAGTGGCCCTCAAGATttaacgaaaaaatcaccacCACTTCCTCCTCCGTTATCCGCGATGAACGAAATATTCGCCCAACATTTGAACTCCCCACCGAAGATTGATCCAGCGGCTTTGTACGCAACCCAATTGGCTTTGGCTCGGAACACATTCCCCGGTTTTTCGAATTGGCCCGGATTCCCCATAAATCCCCTGCTTTTCCAGACGTTGCAATCGCCCCTTCTTCCACCGGAAGCGCAAGAGATGAAGGAGAAACTTCACCGCTACCAACTGTGCGGCGGTAGTCTGATCAACGATCATTTCGCCGAACGCCTCAAAAACATCCAGGCGTTTTCCGGCGCCCTCAACGGGTTCAAAATCGCGGAAGCCTCGCCGCCTTCGGAACGCATCAAGCCGTCCGATTTCGCAGCGAACAAGGGCGAAGATCTGAACAAGCCGCTGAGTCTGAACGTCGATTTCGCGGACAGCGTCAGCAAATTGCAGAGTCCGGTCTCGTCGGCGAAGCAGCAGGACATGATCCAGTCGCCGAATTCGGCCAAAATGGTGATCAAGAACGGCGTGCTGATGCCGAAACAGAAGCAGCGCAGATACAGGACGGAGCGGCCCTTCACGTGCGAACACTGCTCGGCCAGGTTCACGTTGCGCTCGAACATGGAGCGGCACATCAAGCAGCAACATCCGCAATTCTGGTCGCAGCGCCAGCGGGGACACGTCGGCACGCCCGGACGCAAGACCCAGACCAATCTCATGGCGAAACCGAACTACTGTGATCTCAGCATACCAAATTACGAAGTACCAAAGACGCAAGATTACGACGATTGCAATACCAAAGAGCACGAGGAGAAAGTGAAATTCGCGATCTTGGCCCAACATTTGAGGGTGAGCAGTCTGAACAGCGATCTGCCCGAAATCAAGAAGGAGGAAGAAGACGATTGCGCCCTAGTGATTGACGAAAACACCGAGGGCGGTAGAGGCGACGGTAGTACTAAGACTGAAGAACGTTCGAATGGGTTCGAAAGGAGCCGGATTCTGGAGGAGAAATTGATGGAACTTCACGCTAAACAAGCCAAAAACGAACCGAACGCGTCTAACACCAGACATGAAGAAAATCAAGATTTGGTACCGGTCTCCCGCCTGCTAGACAACGCCTCTCAGCAACAATTCAAGGAGTATTTCAAGCGAGACGGCGAAGAGCACGAAGTCGGCGGCGCCagcgaagaagacgaagaaggTCTAGTAGCCAGCGGGAGCACCAGCGAAGGGAACGTCTCGGGAACCGACGAAAATAGGTCCGAATCCGAAGCACCCGCTCCGCCAAAAAAGAAGTCGGCTTACTCCATGGCGCCGAATCGGGTCAGCTGCCCTTACTGCAACCGGAAGTTCCCGTGGAGCTCGTCCCTGCGCCGCCACATCTTGACCCACACCGGCCAAAAACCCTTCAAGTGCAGCCACTGCCCTCTCCTGTTCACCACGAAATCGAATTGCGATCGCCACCTCCTCCGCAAGCACGGCAACGCCGCCACGACCATCACCAACGACGTCGTCAACAACAACACCAACTACCTGATGAGGAACGTCCCGGAAAGGCCCTTCAAATGCTCGAGTTGCCCTAGCAgcacattttcgacctactCCAACCTGAAGAAGCACATAAGCTGCAAGCATTCGACCAACGCGCAGGGGGACGACATCAAGGCGCAAGGGTACGAGGCGGGCAGCTCAGAGGACGAGAAAATCCCAACTTGCGACCACAAGAACGACTGGGATAACCAAGTGAACCACAAGGCTTCCGCTTCCGGCGAGCCGCAATCTGCAGCAGTTTCCGTGCAAAACTCCGATTTGCCCTTCAAGTGCCACCTGTGCGACGGGTCGTTCGCGGACCGCCAGGACGCCCTGGACCACATAAAAGACAAGCACTTCTCCGAGTACGACCTGCTCATGTCGAAGAACGCGCTCGACAGCAACGCCACCACCCCGGACGAGAACGCGCACCACGAGGACGAGGAGAACGACATGAGGGGCAAGTTTCCCGACTACTCGAACCGGAAGGTGATCTGCGCCTTCTGCATGCGCCGCTTCTGGTCCGCGGAGGACCTGCGGAGGCACATGCGGACGCACACGGGCGAGCGGCCCTTCAGTTGCGACATCTGCCGCAGACGGTTCACGCTGAAGCACAGCATGTTGCGGCACAGGAAGAAGCACAACGTGAACTTCGACAACGAGAACGCCAACAACAGCGACGAGGACGTCAGTCACGCGTCGCCGAGCTTCGAGAAGTTCACGAAGGCCGACAACAATCGGCCGGCGCAGACTGTCATCAAGGGGGAGAAACTGGAGGAATCTGACGGTAATGAAGGGAGCGATTTAATCAGTAACCTTCTCGGTATTAGCGATCGGTCTTTCATCGATAAAATGTTGACGACTTCTGCTGACGATGCCGCTAAATTGTTGGGGGTTAAAAATGGGGTAAAAGAGTAA
Protein Sequence: MQGVVFMPQNPQQGSPPPNNTIVTDFTMERSPEPNHAVITKDKAANNRSAVSRESDSGIFSTTEPLDASTRTTSSENCDTDNRSDCSSPERKYVCPICDKMLTSQHDFTLHIRSHNNETEIQDEKGFTCRICRKVLSSSSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHSNHKAENYESDGSVDSNVSSSSKSIEYNNNKIDSKFGVKRKLDECHQPPGKRQETGSSDSEGHLHNRRAYKCPVCDRNDFDSLLVLETHLEDNHPDYPAKCNQCNQIFQNNKLLSAHRSTVHESSVTKHHVTGFNDLTFVDFSSEKFPHIARYECERKLHKVAGGLKFQCKRCSRAFPCSNSLEIHERDCLAHQPNGLDLSRPAARISENEIRRSEFFSRLNLQDNSPEKFAPPHHLLSDTSAKLRQQLISKAIRPIDQTKDLADIQSIISMTSNGSLLQQLQAKSDMGLNQKPLGDMSNDSMGHCEQEEESQDIFAVEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNNNGMYRCNMCPYSSIDKATLIRHMRTHNGDRPYECALCNYAFTTKANCERHLRNRHAKKTREEVKKSIIYHPSEDPTNEDLNKLTRDDLRKPLLDSDIMLTPERVNRSVTPKLADMRGILPEIVKSEMSPTLIPTLLKDVPLAKEPPKILSNINEIIRNENLRSLKEHNFPHQNEPLSPYLQPQYNFAPKPSNISTPQNLTSKIQVKSLEVLKENCYDSPSDSDNDRDEDDDDDEEEPAVLDLSKKKHEEPIRRLKDESGPQDLTKKSPPLPPPLSAMNEIFAQHLNSPPKIDPAALYATQLALARNTFPGFSNWPGFPINPLLFQTLQSPLLPPEAQEMKEKLHRYQLCGGSLINDHFAERLKNIQAFSGALNGFKIAEASPPSERIKPSDFAANKGEDLNKPLSLNVDFADSVSKLQSPVSSAKQQDMIQSPNSAKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGHVGTPGRKTQTNLMAKPNYCDLSIPNYEVPKTQDYDDCNTKEHEEKVKFAILAQHLRVSSLNSDLPEIKKEEEDDCALVIDENTEGGRGDGSTKTEERSNGFERSRILEEKLMELHAKQAKNEPNASNTRHEENQDLVPVSRLLDNASQQQFKEYFKRDGEEHEVGGASEEDEEGLVASGSTSEGNVSGTDENRSESEAPAPPKKKSAYSMAPNRVSCPYCNRKFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNAATTITNDVVNNNTNYLMRNVPERPFKCSSCPSSTFSTYSNLKKHISCKHSTNAQGDDIKAQGYEAGSSEDEKIPTCDHKNDWDNQVNHKASASGEPQSAAVSVQNSDLPFKCHLCDGSFADRQDALDHIKDKHFSEYDLLMSKNALDSNATTPDENAHHEDEENDMRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNVNFDNENANNSDEDVSHASPSFEKFTKADNNRPAQTVIKGEKLEESDGNEGSDLISNLLGISDRSFIDKMLTTSADDAAKLLGVKNGVKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -