Spla009376.1
Basic Information
- Insect
- Salpingus planirostris
- Gene Symbol
- ECU03_0790
- Assembly
- GCA_949788335.1
- Location
- OX460923.1:3838412-3841122[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.25 20 5.8 2.1 1 23 113 135 113 135 0.98 2 15 0.12 10 6.8 0.3 2 20 141 159 140 161 0.92 3 15 0.00028 0.023 15.1 0.7 1 23 173 195 173 195 0.98 4 15 5.1e-05 0.0041 17.5 1.1 3 23 200 221 199 221 0.94 5 15 2e-05 0.0017 18.7 3.4 1 23 230 252 230 252 0.98 6 15 8.2 6.7e+02 1.1 0.1 1 23 257 279 257 279 0.91 7 15 0.0054 0.45 11.1 3.2 1 23 285 307 285 307 0.98 8 15 0.67 55 4.5 0.4 1 23 310 333 310 333 0.88 9 15 0.0001 0.0082 16.5 3.3 1 23 342 364 342 364 0.98 10 15 0.0031 0.26 11.8 2.3 2 19 372 389 371 392 0.95 11 15 7e-06 0.00057 20.2 1.0 3 23 407 428 405 428 0.95 12 15 1.1 91 3.8 4.2 2 23 436 457 435 457 0.93 13 15 0.00034 0.028 14.8 3.0 1 23 463 486 463 486 0.95 14 15 2e-08 1.6e-06 28.2 0.8 1 23 492 514 492 514 0.98 15 15 7.1e-07 5.8e-05 23.3 3.9 1 23 520 543 520 543 0.97
Sequence Information
- Coding Sequence
- ATGCGGCACTTACGAATTCCAGGCCACAACATCAAAAACGTATCATCTTTTAAGAACCAGATTGGAGGCTTACTAAAGCAAATCAACAAGTTCGGCGATGGCGAGAAAACGGAGGCTCTGTCCTATATACAAAATTGCATCAATGAGACCTCAAAACCGAAGAAgccgaaaaagaagaaaacgcAAACCACCACTAATGACGATTACACCTATAGAATGTTAATGAGGCGACGTTTAGATCCTGCCAAGATCAAAAATAAGAGCAGCAATTGCGATACCACCTCGATAATGAGAATCGGAAAATTGAAAGCGAAAATCAAAGTCAAGAAGCCTGTTTATAAATGCAAAGTGTGCAGTTTCACACAGAGCATCAAGAAGAGTATGCTCAGACATCTGGAGACGCACGTCGGTGCCCCTTTGTCATGCCTTAAATGTAAACAAACGTTCAATGGGAGTGTGTCTTATTCATGGCATTTGAGCTACTATTGCAGGCGTCCGTTTCATAAAAAATGGAAGTATAAATGCAACGAATGCTCGAGGGAGTTCCTATCCAAACGCAATTTAAACGGCCACATGCTAGGACACAAGCGCAACAATTGCACCTATTGTGATTCGGTTTTCACCAGGCAGATCCATCTGATGAGACATTTATTAGAAGTGCACCAAATTCGCCTGCAAAGAAACACCtacaagtgtaatgactgcGAAAAGAGTTATGTGAAGAAGCGTTCTCTCTATTACCACATGAAGCAGCATATGCCTAATAAATTCGTCTGCATTGAGTGTGGTCATATCAGTGATACAGTAGATGACAATGTTGAGCATCAAAAGGGGCACGATCTTATCAAACATTTCACCTGCGCTAAATGCGGTGAGAAGTTCTTGAGAAGACAGCAGTATTTGCACCACCTCAAAGTCCATGATCGATACAAATGCATCACCTGTAACGAATCGTTTGCCTCGAGGGAAAGAATTTTACTTCATAAACAACAAGGGCACTCAATTGAGGGCTTTAAACCGAAGTTTATTTGTCCTCATTGCCCTTTGGCTTTTCATAGGCGAAATTCTCTTTTTGTGCATCTCAAAAAGCATAACGAGAGTAGTCGTAATATCAGCtgtaaatattgtaagaaaaatttcagttcgCCCTACGCTTATTACAAGCATTGCGTCACGATAAGCCACGAGAAATTCAGTCCGGAAGTGAGCGATTTAGCCTGTAAAAGTTGCGGTAAACGTTTCATAAAGAAGTACGATTTGAAACAGCATATGTATAGAGCTCATAACGTAACTAAAGATCCCTTATCGTGCGAATATTGCACTTACAAGAGTTATCACAAGTGTAACATGGACAGACATGTTGCTCTACATTTCAAAAAGAACGAGTTTACTTGCGAGCATTGCGGAAAAACTTGTGATAGCCTAGTGAGTCTGAAAGGTCACATTTCTTATAATCATCTGCAAGAGAAACAGTTTCCATGTGATAAATGCGATAAGGCTTTTAAAAGGAATTCGGAATTGATTAGGCATCAGAACAGTCATTCAGATGAGCGTCCCCACCCTTGCGATTTGTGCGGAAAGTCTTTTAAAAGAGTGAATCATCTCAAGAGACATCTGAAGACTGTACACCAAATTGTCGAGGAAACGAGAAGAATTAAAAAGGTGGAAGTGGAGTCCCCTAAAGTGTTGGTCAACAGTCCTTGGTTGCCGTGA
- Protein Sequence
- MRHLRIPGHNIKNVSSFKNQIGGLLKQINKFGDGEKTEALSYIQNCINETSKPKKPKKKKTQTTTNDDYTYRMLMRRRLDPAKIKNKSSNCDTTSIMRIGKLKAKIKVKKPVYKCKVCSFTQSIKKSMLRHLETHVGAPLSCLKCKQTFNGSVSYSWHLSYYCRRPFHKKWKYKCNECSREFLSKRNLNGHMLGHKRNNCTYCDSVFTRQIHLMRHLLEVHQIRLQRNTYKCNDCEKSYVKKRSLYYHMKQHMPNKFVCIECGHISDTVDDNVEHQKGHDLIKHFTCAKCGEKFLRRQQYLHHLKVHDRYKCITCNESFASRERILLHKQQGHSIEGFKPKFICPHCPLAFHRRNSLFVHLKKHNESSRNISCKYCKKNFSSPYAYYKHCVTISHEKFSPEVSDLACKSCGKRFIKKYDLKQHMYRAHNVTKDPLSCEYCTYKSYHKCNMDRHVALHFKKNEFTCEHCGKTCDSLVSLKGHISYNHLQEKQFPCDKCDKAFKRNSELIRHQNSHSDERPHPCDLCGKSFKRVNHLKRHLKTVHQIVEETRRIKKVEVESPKVLVNSPWLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -