Spla012617.1
Basic Information
- Insect
- Salpingus planirostris
- Gene Symbol
- -
- Assembly
- GCA_949788335.1
- Location
- OX460926.1:3634895-3636993[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.087 7.2 7.3 0.3 3 20 6 24 4 26 0.86 2 14 0.11 8.7 7.0 0.5 2 20 32 50 31 52 0.92 3 14 0.005 0.41 11.2 1.4 1 20 237 256 237 258 0.94 4 14 0.0034 0.28 11.7 8.2 1 23 267 289 267 289 0.99 5 14 0.00013 0.011 16.2 2.3 2 23 308 329 307 329 0.97 6 14 0.027 2.2 8.9 1.8 1 23 359 380 359 380 0.86 7 14 0.00011 0.0093 16.4 1.1 1 23 387 409 387 409 0.96 8 14 0.0024 0.2 12.2 0.2 1 20 415 434 415 436 0.94 9 14 0.00013 0.011 16.2 2.0 1 23 443 465 443 465 0.97 10 14 2.9e-06 0.00023 21.4 3.7 1 23 471 493 471 493 0.98 11 14 2.4e-05 0.002 18.4 9.5 1 23 499 521 499 521 0.99 12 14 1.1e-06 8.8e-05 22.7 0.4 1 23 527 549 527 549 0.98 13 14 0.00011 0.0087 16.4 0.2 1 23 553 575 553 575 0.98 14 14 0.0014 0.12 12.9 0.1 1 23 583 606 583 606 0.96
Sequence Information
- Coding Sequence
- ATGGTCGAAATCAGATGCCCCCTTTGCTGTAATGAGACTTTTCCGACACAATTATCCTTAAAAACTCATCTTTTGGAAGTGTCGGACAGCTTGAAATGCCCTTTTTGCTATAGAAAGTTCAAGGAATTACGTAGATTGGCTTCGCATCTAGGTAAAGACTGCATCGGAATTTCGGAACTCGACCCGCTAGCGAAAATGTTACCCAGCAAAAGCAACGTGAACTTTGAAGGCATTTTCATTGAGGAAACCGTAGACGATAGCGACAGCGTCCTACCTAGTGCACTTTCAACGAACGAGGAAGATGACGCGGACAGCTCGACTATAAAAAACGAGGAGGATCAAGACCAGGCCGGAACATATTTCTGCCAAATGTGCTCCGTCTACTTCGAGAACATCGAAGAGCACCTTCAAGAGTTCCACGAGGGGCAAGAAGTGACTGTTGAGGAAGAAGGTGAACTAGAAACCCCAACAACTTCTGAGCAACAAGAGAAGAAAATAAAGGAGGAGCAAGTACCGGAAGAGCAGTTCAAAGACAAGGAGGGGCGGCTTTACACGCGGAAATTcgtgaaaatcgaaaagttcTGGCTGGAAAACGACAGTCTCAATGAGCCTATCACCCAGAAATACATCGTCGTAAATGGAGAAGTCAAGAAAATCTCCGAAGATGAGGAAGAACGGCTAGAGGATAAGTCGCAAGTGATTTTGATCCACCAGTGTCCGGATTGCGACCTCCTCTTCCCCGAATTGGACAATTATAAAAGGCACAAATGCGAACAAAACGGGGAAAAGAACTCGCGGTTCAAGTGCTCCCATTGCGACACGTACTTTGACCATTTCGAGACGTTCCGGAACCACCTGAAGACGCACTCGGGCAAAACCAAGGCGAAACCGGCCAACATAGTCGGCGCTTTCGGCACCCTGAAGTGCGACACCTGCAACACGAGCTTCCCGACTTTCAAATCGCTGCGACTTCACAAGAGGATGCACGATCCTGTCAAAACGCGAGACGCGGAGGCGCCCGTCTCTTATCCGGGCAACCGAGAGGACTCGGACGACCCGAAACTGAAACAGCTGTTCGTGTGCAAGATCTGCGACAAGACCTACCACAAGCAGTACGAGGAGGCGCACATGGAGTCGCACGACTCCGCCAACGACGGCCACAACTGCGCCGTCTGCAACAAGCGCTTCTTCACCGAGGTGAACCTGGCGATGCACATGAAGGCGCACACGAACAACAAGAAGTTCGCGTGCAGCTACTGCAAGAAACCGTTCATGACGTTCGCCGCCTTGAACGAGCACCTGACCAACCAGTGCCAGAAGAGGCAGTACGCGTGTCAGTTCTGCGGCAGGCGGTTCTCGCGCCCCCACGAGAAAGTCAAGCACGAGCGGATCCACACCGGGGAGAAGCCGCACGTTTGCGAAATTTGCAATAAGGCCTTCCGAGTCAGCTACTGCTTGACTCTGCACATGAGGACGCATTCGGGCTCGAGGCCTTATCAGTGTACGCATTGCGGCAAGCGGTTCAAGTCGCACAGCGCCTATAACCATCACACTCAGACGCACTCGGACGTCAGGGCTTACAAGTGTCCGTACTGTCCGAAAGCGTTCAAGACTAGCGTGCAGCTGGCGGGGCACAAGAACAGTCACACTAAGCCGTTTTCTTGCACCGAGTGTAACAGGCCTTTCGCCTCGCTCTACGCGGTCAGGGGGCACATGGAGACCCACAAGAGGGACAATAACTTGCGTTACGAGTGCTGGATGTGTGGGGCGCTTTATTCGAGGGCTTTCGCTTTGAGGGATCATTTGAAGCAGCAACATCAACAGACTGATGTGGATAAAATTAGGACCGTCGCTAAAGGGGCGTCGGTTGTCACTGATAATGCGGAACAGGGCGaagaagatgatgatgatgatgatgaagaggAGGATGACGATGATGGGGATGCGACTAATTCGATTTTAGTCAAGGACGATGCGGATAACGTCATTTTGGAATTCGATGGGACCGGGGCTAACGTTGAAGTTATTAATAACGAGGATGaatga
- Protein Sequence
- MVEIRCPLCCNETFPTQLSLKTHLLEVSDSLKCPFCYRKFKELRRLASHLGKDCIGISELDPLAKMLPSKSNVNFEGIFIEETVDDSDSVLPSALSTNEEDDADSSTIKNEEDQDQAGTYFCQMCSVYFENIEEHLQEFHEGQEVTVEEEGELETPTTSEQQEKKIKEEQVPEEQFKDKEGRLYTRKFVKIEKFWLENDSLNEPITQKYIVVNGEVKKISEDEEERLEDKSQVILIHQCPDCDLLFPELDNYKRHKCEQNGEKNSRFKCSHCDTYFDHFETFRNHLKTHSGKTKAKPANIVGAFGTLKCDTCNTSFPTFKSLRLHKRMHDPVKTRDAEAPVSYPGNREDSDDPKLKQLFVCKICDKTYHKQYEEAHMESHDSANDGHNCAVCNKRFFTEVNLAMHMKAHTNNKKFACSYCKKPFMTFAALNEHLTNQCQKRQYACQFCGRRFSRPHEKVKHERIHTGEKPHVCEICNKAFRVSYCLTLHMRTHSGSRPYQCTHCGKRFKSHSAYNHHTQTHSDVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCTECNRPFASLYAVRGHMETHKRDNNLRYECWMCGALYSRAFALRDHLKQQHQQTDVDKIRTVAKGASVVTDNAEQGEEDDDDDDEEEDDDDGDATNSILVKDDADNVILEFDGTGANVEVINNEDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -