Spla004324.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Salpingus planirostris
Gene Symbol
-
Assembly
GCA_949788335.1
Location
OX460919.1:3789103-3791957[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.017 1.4 9.5 4.0 2 23 296 317 295 317 0.96
2 13 0.18 15 6.3 0.1 1 21 321 343 321 347 0.90
3 13 0.012 0.99 10.0 1.4 3 23 411 432 409 432 0.93
4 13 6.5e-05 0.0054 17.1 1.3 1 23 438 460 438 460 0.96
5 13 3e-06 0.00024 21.3 2.1 1 23 475 498 475 498 0.96
6 13 1.2e-06 0.0001 22.5 2.9 1 23 504 526 504 526 0.98
7 13 0.00011 0.0093 16.3 3.9 1 23 532 555 532 555 0.98
8 13 7.6e-05 0.0063 16.9 3.5 3 23 563 583 563 583 0.99
9 13 3.6e-07 2.9e-05 24.2 0.7 1 23 589 611 589 611 0.99
10 13 8e-07 6.6e-05 23.1 4.7 1 23 617 639 617 639 0.99
11 13 1.4 1.1e+02 3.5 10.0 1 23 645 667 645 667 0.98
12 13 1.3e-05 0.0011 19.3 0.1 1 23 673 695 673 695 0.98
13 13 1.1e-08 8.8e-07 29.0 1.9 1 23 701 723 701 723 0.98

Sequence Information

Coding Sequence
atggcgtcgaGTAATCTTCTTTGCGATATGGCCATTTGTCGCCTTTGTGGGGAGGAAAATAACCACGGAACCGACTTGTTTCCAACAGAAGAAAATCCAGTCGATTTAAGTGAACTCGTGAACAAATATTTGCCATTAAAGGTTGATAACGACGGAAAACTACCCAGAATAATATGTCCGGGCTGCAATATTCAACTGGAAGCCACGAAATCGTTCATAGACCTTATAATTGAAGGGCAGTTGAAATTGAGACAACTTTACAAAGCTCAACAGGACAAATTACATCGACAGGAAAAACAGAGACTGCAACTCGAAGAGGCACTCAAAAGTGTTAACCCGAATTCCAATGTCGGTACTTACACGATACAGTCAGACGAAACTGGCGAAAAATTCCTAATACAAATTTTCTCCGAGGGACCTCTATTTCCTCCAGAGCACGAATTATCGTTAAGAGCAGAAGGCTTGGAGCGTCCGAGACGTAAAAGAGGCCGCCCTCCTAAACCCCCACCGACGAttaaagaaaatgaagaaactGAAGAGGCACAAGCGGACGATCCATCGAAAGACGACCCTCCGGAAGATCAATCCAACGACGACGGAAAACGGAGACGTCGCATCAAAGTTCCCACCCGTTATTCGGAAGCGCTGCAGGGAAAAGAACTCGACAACGTGTTCAAACGAGAAGGCGTCATCGACGAAGAGTCACTTTCCGAATCGGACGAACGGGAGTCGCGCACCGAACACCCGAAAAGAGTCGAAGAAGTCATCGGCAGACTCGAAAACGATAAAGGCGAAGATTTGGGGCAACCGGTGATAGTCAATAAGACTCTGAACCGTACTAGGATCAAAAGCAAAGGGGCGCAATCGCGCAGGAAACGACGATGTCAATGCGAAATCTGCGGCAAGGAGTTTCTGCACCAAGGACGGTACGAATTACACAAGAGGACTCACGAAGTCGCCTATAATTGCCAGGAGCCGGATTGCGATTTCACCAGTAACGAGAAGGATTTGCTGGAAATCCACCAATCGGAGACTGGGCATGTCGATATGGAAGCCGTTGAGAAGATTGATCAGTACGGTACTTTACAGTTACCTACATTAAAACCGGAAACTCTCTTATCGGAACCAGAGGACGacttgttattgttattacccTCTTCTACTACTAGTACCATTGCTACTATGACTAGTACAAGTGGTAAAAATTCTCCTTCGAAAAGAGAAATGAATTGCGAGATTTGCAGCAAGACTTTCTCGTGTAAACAGAATTATGAAGTGCACGTAAAAGCGGTGCATGACGGCGAAAAGCCTTTCGCTTGCGATTTCTGCACTAAACGCTTTTCATACGCCAACAGCTTGAGGTTGCACATGTTGCAACACGTCCGAAAAACAGGAGATGAAGACGACGGCTCGAATATGCAGTACAAGTGCCCTTCGTGCCCGAAGACCTTCCGTCATCCGAGCAGCCTCCAGTATCACAGGGACTCGGAACACACCAATGGGCGCCGATTCGTGTGCAACAAGTGCGACAAACCGTTCAAACACCGGCAGCTCCTGCAGCGCCACCAGCTGGTGCACTCGGACGAGCGCCCCCATCGGTGCAACCAATGCGAATCCGCGTTCAAAACCAGGGCCAACCTGATCCACCATACGCGGACGGTGCACGCGGGCCAGCGGAGCCACTGGTGCTCCCAGTGCAACAAGACGTTCGTGCACAAGACCGCCCTGAAGTTGCACCAGAGGTGGCACTCGGGCGTCAGACCCTACCAATGCGATTTCTGCCAGAAGGCTTTTTCGCAAAAGGGAAATCTGGCGGAACATCGGCGGATTCACACCGGAGAAAAGCCCTACCAGTGCGACCACTGCGGCAGGGCGTTCACCACGAGTTCCCAATTCAAATTGCACCGTAAAAGACACCTGGATGACAGGCCGCACCGATGCGAGTTCTGCTCGAAAAGTTTCCTGCATAAAGTCACGCTCAAGTGTCATATGAGGAGGCATTTAGATGAGAGGCCCTACAGGTGTCAGGTCTGCCCGAAGACATTCCCAGAAGCTTGGGCTTTGAAAAAGCACGAGCGGTTACACACTGGGGAGAAACCGCACAAGTGCGAAATTTGCGGCAAGGCTTTTGCAGACAGTTCGAATTTGACAAAACATAGGAAAACCCACAGAAATAACAAaccgcaaacgcttaataaATCGACGGAAATCGTTTTGGTCACCACTCTGGAAAAGGCTTTAGATGACGGTACTAATCCTGATGATTTCGGTCTGTTAGAGGAGCAGGAAATTGTCGGCGATTTGGGGGAAGTTCAGCCGATTCAGCTGCAGCAGTTGATCGATCAGGACGGAAATCCGATCACTTTCACCACGCAAGACGGGCAGCAGGTCAAAGTGGTCACTAGTGGTGAGGACCAAGAAGACATTCAAGGTCTCTTACCGGACGGCACTCTGATTCCTATAAATGTCACGATGGTGCCGCCCGATAAAAACCGACCTATCACCCTTGAGGAAGATTCCGTGGTTCAGGATGTTTCGATCGAGGGGCATCAACTCCTCGAAGGGGGGATACAGTTTTTGGAGGACGATGCCGATAAAGGTGGTGCCAGTGTGCAATTTATTACAGAGGACACGCAAAATATGTGTCTCGTCGCGACTTATAATATTGAAGACACGATTAATCCACAATATTTAAACATTGCTTGA
Protein Sequence
MASSNLLCDMAICRLCGEENNHGTDLFPTEENPVDLSELVNKYLPLKVDNDGKLPRIICPGCNIQLEATKSFIDLIIEGQLKLRQLYKAQQDKLHRQEKQRLQLEEALKSVNPNSNVGTYTIQSDETGEKFLIQIFSEGPLFPPEHELSLRAEGLERPRRKRGRPPKPPPTIKENEETEEAQADDPSKDDPPEDQSNDDGKRRRRIKVPTRYSEALQGKELDNVFKREGVIDEESLSESDERESRTEHPKRVEEVIGRLENDKGEDLGQPVIVNKTLNRTRIKSKGAQSRRKRRCQCEICGKEFLHQGRYELHKRTHEVAYNCQEPDCDFTSNEKDLLEIHQSETGHVDMEAVEKIDQYGTLQLPTLKPETLLSEPEDDLLLLLPSSTTSTIATMTSTSGKNSPSKREMNCEICSKTFSCKQNYEVHVKAVHDGEKPFACDFCTKRFSYANSLRLHMLQHVRKTGDEDDGSNMQYKCPSCPKTFRHPSSLQYHRDSEHTNGRRFVCNKCDKPFKHRQLLQRHQLVHSDERPHRCNQCESAFKTRANLIHHTRTVHAGQRSHWCSQCNKTFVHKTALKLHQRWHSGVRPYQCDFCQKAFSQKGNLAEHRRIHTGEKPYQCDHCGRAFTTSSQFKLHRKRHLDDRPHRCEFCSKSFLHKVTLKCHMRRHLDERPYRCQVCPKTFPEAWALKKHERLHTGEKPHKCEICGKAFADSSNLTKHRKTHRNNKPQTLNKSTEIVLVTTLEKALDDGTNPDDFGLLEEQEIVGDLGEVQPIQLQQLIDQDGNPITFTTQDGQQVKVVTSGEDQEDIQGLLPDGTLIPINVTMVPPDKNRPITLEEDSVVQDVSIEGHQLLEGGIQFLEDDADKGGASVQFITEDTQNMCLVATYNIEDTINPQYLNIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-