Spla004308.1
Basic Information
- Insect
- Salpingus planirostris
- Gene Symbol
- -
- Assembly
- GCA_949788335.1
- Location
- OX460919.1:3714477-3718204[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3e-05 0.0024 18.2 0.9 2 23 153 174 152 174 0.97 2 15 5.4e-05 0.0045 17.4 4.2 1 23 179 201 179 201 0.97 3 15 0.00021 0.017 15.5 5.2 1 23 207 229 207 229 0.97 4 15 0.0024 0.2 12.2 0.4 1 19 235 253 235 256 0.94 5 15 1.1e-05 0.00092 19.5 1.1 1 23 263 285 263 285 0.96 6 15 0.00098 0.08 13.4 9.0 1 23 472 494 472 494 0.97 7 15 4.8e-06 0.00039 20.7 6.4 1 23 500 522 500 522 0.98 8 15 1.9e-05 0.0016 18.8 1.7 1 23 528 551 528 551 0.93 9 15 0.071 5.8 7.6 2.2 1 23 570 592 570 592 0.94 10 15 0.00065 0.053 14.0 8.2 1 23 598 620 598 620 0.98 11 15 1.3e-06 0.00011 22.4 0.5 1 23 627 649 627 649 0.96 12 15 8.2e-06 0.00067 19.9 1.3 1 23 655 677 655 677 0.98 13 15 2.5e-07 2.1e-05 24.7 0.9 3 23 685 705 683 705 0.96 14 15 1.2e-05 0.001 19.4 0.1 1 23 711 733 711 733 0.99 15 15 0.95 78 4.0 1.6 1 23 738 761 738 761 0.93
Sequence Information
- Coding Sequence
- ATGGCAGAGGTGCATTACGATTTCAGCCGGATCTGTCGCTCGTGCAAGGGCGAGTCCGACGACCTCAAATCGGTCTTTGAATTCTCCGATGTGGCCGCAGAAAATCCCCGTATTGACGAGATGCTAATGGCTTGCACTGCCGTACAGGTGAAACCGGAAGACGGATTGCCCGCAATGATCTGCTCAAAGTGCCACGACCAACTGAAATCGGCTTACGCATTTAAGAGATTGTGCGAGGAGTCTGATACGAGTCTCAAAGAATACGTAAACAGTATAAAAAACGTAGAAAACTCGACCGCACCGATAAAACAAGAAGGTCAAACTCAAGACTCCCCCCTCGATATAAGCGCGAGTCTAGACGAGATTCTGTCAGAAGACGGGGAAAGTCCCATCGAAGATCACTCCTTACTATCCTCGGACTTGATCGAATTCCTCGACAACAACCAAATGCTTTTGACGTGCCGCATATGTCGTAAAGTCTTCACGACTTTGGAAGGCCTCAGAAGTCATAAACGCATCCACCTGGGCACCCTGTTCAAATGCAAGTACTGCGGCAAAGGGTACACGCGACAAACGCACGTTTATAGGCACGAATTATCCCATGGCAAACACAAATTGCACGTTTGCCGGATCTGCAACAAGACTTTAACCAGAATGGAGCACCTGAAACGTCACTTGACGACCCACCTGAAAGAGAAACCGTTCTCGTGTTCGTCCTGCAATCGGGGCTTCAACCGATCGGACCATTTGGACGTCCACGCCGTCCGGTGCAAAGGAGAGCGCGTCCACATCTGCGACATCTGCAATCGGGGCTTCACGCGCGAAGACAGCCTCCAAGTCCACAAGCGCCTTCACGAAAACCAGAAACCTGTATTACCGACTCTGGACAATATCGACAACATCGAGGAGCACTACTACGAGATCGACCACGACCCGAACGCCGACTTCTCCAATTCCGACCTGGACGACTGCTTCGAGCCCCAAGTCGAAATGACGGAAAACCCCGAGGACGATAAAGACGATTTGCCGAACGACGAACCGCTGTTGACCCCGAAAACTGACGGGGAAGACGAGgagaatttgataaaaaacGAGGAGCAGCAGATCCTCGACGATAACAAAGCGCTCCTGGATCGGCTAGTGAGCATGGGCACCAACGAGCCGCCCGGAGAGACGGACAGCGCGGACTCGGACTACGTGCCGAAgaaaccgcccccgaaaaTCAAGagggggcgggggcggcccCGGAAGAACCCGGTGAAGAAGGCGCGCAGTGTCGGTCGGCCCAGGGGGCGCCCCCCCGTTAAGCGCGAGCCGTCCCTGGACCTGGAGGTGCACGAGGACGAGCTGCTGGACACGGAGCACGACGAGAAGGACGAGGCGAGGGGGGAGAGGCGGATGAGGCGCAAGGTGCACCACTGCCGCATCTGCAAGAGGGAGTTCTCGAGGTACAACCACCTGAGCCGCCATATGAATTCGCATTCGGTCGTTAAGCCGTACCAGTGTGAAGTTTGTCACAAGCGGTTCACTAGGCGCGATCATCTGCAGCAGCACTCGAGGCTGCACGACAAGAAGCCGGCGCACGCGTGCGAGTCGTGCGGGAAGACCTTCAGCAGGACGGACCAGCTGGCGAAACATAGAGCTTCGAAACATTCTGGCGGGGAAAAGGACGAGATGTTTGACCCTCCTTCGTCCGGCGATAAGAAATTCGAGTGCCACGTCTGCATGAAAAGCTTCACCACCGAGAAATACAGGGACGTCCACGTCAAAGGACACATGGGCGAGAAGCGATACAAATGCCGAACGTGCGATAAATGCTTTTTATCGAAATCGCATTTGACAGAACACATGAAGTTCCACAACGAACATTCGAAAAAGTTCTTGTGTTCGGAATGCGGGCAGCGGTTCATACGAAACGATTATCTGGTGATACACATGCGCAGGCACAGGGGGGAGAAACCGTTCAAATGCAAGTTTTGCGGAAAAGGATTTCCTCGCACGACGGATCTGACAGTCCACGAGCGCTATCACACGGGAGAGAAGACTCATCTGTGCACGATATGCGGCCGGGGTTTCGGCAGGGCGTATAATCTGACGGTTCACATGCGGACCCACACCGGCGAGAAGCCGTATCAGTGCACTTATTGCGACGCCGCGTTCGCCCAGGGCAACGACCTCAAGGCGCACGTCAGGCGGCACACCGGCGAGCGGTTTCATTGCGAACTCTGCTCGGAAAGTTTTTTGATGGGGTACCTGCTCACGCAACATAAACGGAACGTGCACGGTTTGAACGTGGTCAGTAATATCCGAAGACTTCAGCCGGCCAATAAGATCAAAGAGGACACTGACGAGCCGCCTCCGATCACGATTCCTCTTCCGAAACCAGTCGTGCCCGATATGTTGTTGGCGAATTTGCAGGCGCACCCCGGTACGTTCCTGGGTCATCATATGGCCAGGGAATAG
- Protein Sequence
- MAEVHYDFSRICRSCKGESDDLKSVFEFSDVAAENPRIDEMLMACTAVQVKPEDGLPAMICSKCHDQLKSAYAFKRLCEESDTSLKEYVNSIKNVENSTAPIKQEGQTQDSPLDISASLDEILSEDGESPIEDHSLLSSDLIEFLDNNQMLLTCRICRKVFTTLEGLRSHKRIHLGTLFKCKYCGKGYTRQTHVYRHELSHGKHKLHVCRICNKTLTRMEHLKRHLTTHLKEKPFSCSSCNRGFNRSDHLDVHAVRCKGERVHICDICNRGFTREDSLQVHKRLHENQKPVLPTLDNIDNIEEHYYEIDHDPNADFSNSDLDDCFEPQVEMTENPEDDKDDLPNDEPLLTPKTDGEDEENLIKNEEQQILDDNKALLDRLVSMGTNEPPGETDSADSDYVPKKPPPKIKRGRGRPRKNPVKKARSVGRPRGRPPVKREPSLDLEVHEDELLDTEHDEKDEARGERRMRRKVHHCRICKREFSRYNHLSRHMNSHSVVKPYQCEVCHKRFTRRDHLQQHSRLHDKKPAHACESCGKTFSRTDQLAKHRASKHSGGEKDEMFDPPSSGDKKFECHVCMKSFTTEKYRDVHVKGHMGEKRYKCRTCDKCFLSKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKFCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFHCELCSESFLMGYLLTQHKRNVHGLNVVSNIRRLQPANKIKEDTDEPPPITIPLPKPVVPDMLLANLQAHPGTFLGHHMARE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -