Spla004442.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Salpingus planirostris
Gene Symbol
-
Assembly
GCA_949788335.1
Location
OX460919.1:4426924-4432494[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.3e-05 0.0011 19.3 1.7 1 23 138 160 138 160 0.98
2 16 0.00019 0.016 15.6 7.0 3 23 168 188 167 188 0.98
3 16 0.0044 0.36 11.3 6.1 1 23 196 218 196 219 0.95
4 16 0.00083 0.068 13.6 1.5 1 23 294 316 294 316 0.99
5 16 2.6e-06 0.00021 21.5 6.0 2 23 323 344 322 344 0.98
6 16 0.00015 0.012 16.0 4.4 2 23 361 383 360 383 0.96
7 16 6e-05 0.0049 17.2 3.4 1 23 466 488 466 488 0.97
8 16 0.00031 0.025 15.0 1.6 1 23 494 517 494 517 0.93
9 16 1.2e-06 9.9e-05 22.6 0.8 1 23 522 544 522 544 0.98
10 16 1.2e-07 9.7e-06 25.7 1.5 2 23 555 576 554 576 0.97
11 16 1e-08 8.6e-07 29.1 0.8 1 23 583 605 583 605 0.98
12 16 1.8e-05 0.0015 18.9 1.6 3 23 617 637 615 637 0.92
13 16 0.00016 0.013 15.9 5.1 1 23 643 665 643 665 0.99
14 16 1.3e-05 0.0011 19.3 4.0 1 23 671 693 671 693 0.98
15 16 4.5e-08 3.7e-06 27.1 0.2 1 23 699 721 699 721 0.99
16 16 0.00015 0.012 16.0 0.1 1 23 727 751 727 751 0.92

Sequence Information

Coding Sequence
ATGATCAATAAGCCGACGGAGCTGGTGATCGATAAAATTTGCCGTTCATGCATGTCCCAACATGAAAATATGCGAAATGTTTTCGATTCCAAAGAACTGGATGGGCAAACATTGCAAATTGCCGATATGCTAATGAACTGTGCATCTGTAGCGGTATCTTCAGGTGATGGACTTCCGAATCTTTTATGCTCAAACTGTGAAAACAAACTCGACGTAGCTTACGAGTTCAAGCAGCAGTGCCAGAAGTCCGACTCAACTCTCAGAGAACTGACGAATAACCAAAGTGACGATAATATCAAAGAAGAATCTCTCGATATAGTCGTTCAACCCGATTTCAGCATACCTGGACTGTTCCAGGAGTCTGATGACAGTGAAGAGGATGATGAGAAAAGTGGTAAAGGCAAGTTGTCTTTCTCCTGTCCGTTCTGTCAGAAGGTTTTGCGTACGAAAAAAGGCCTACGAATCCACCAGCGCCGCCACACCGGCGACAAGTTGAGGGCCTGCCACACGTGCGACGCCCAGTTCACCCGGACGCACCACCTGATTCGACACATGAAGACCCACATCAAATCGACAGATGCGGGCCACGTCTGCGGGCAGTGCGGTCAATCGTTCATGAAGTTGTCCCATCTGTTGTCACACAAAAAGAACCACCACAAATCCGACTCGGGCGATAAAAGCGACGAGGCGGAGAACGGGGAACAATCCAACATCCAGGAGATCATCAGCGATTGCGACGATGTAGAATTCCAAGATGACGGCGAAGACggtgacgatgacgacgacgaagatgatgacgatgacgacgatgaagACACCAACATACTCGACCAGTACCTCAAGAGTAAATTGAAGAGGGGCAAGAAAGAGAAGGGGGCTTACGAGTGCAAATATTGCTTCAAAATTATGACCACTTTTGTGGGATTGAAGATCCATATGAGGAGACATACCGGATCTGATTTGTCCAAATGCAAACTTTGCGACAAGACCTTTACGAAAACTAGCCACCTCAAGCGCCACCTACAGACGCATGGGATTAAAGAAGTCGAGAAGCCTAAAGCTACCGAGAAGAAGGTGATGGAGTGCGAATTCTGCGACAGGAAGTTCAAGTACAAGAAAAGCTTCAACCACCACATGCAATCCGAGCACGGGATGTCGGACGAAAGCGACGTCCCGTTGAGCGCCTACGTGGCGAAACTGAACAGCGACTGCGCCAACAGCAAACCGAAATCGAAACGGGCCGTCGCCATGGAAAACGACGGCACTGGCCCTCCCGAAGAAGCCTCGACGACTCGAGACCCGGAAGCGTCTTTGCTCTCGGACCAGGAGGAGACCACCAAAGAGGACAGCTCGAGCGACACCCCCGTCCAGCAGAAGCCGGCCAACCACAAGGTGCACACGTGTCACGTGTGCGAGGCGGCGTTCGCGCGCGCCAACCACCTCACCCGGCACATGACGCTGCACAGGGCGCTGCTGGTGCACAAGTGCGACCGGTGCGACAAGGCCTACGCGACGCTCGAGCACCTCTCGAAGCACGTCGAGGAGGACCACATCAACAAGCCGTACGCGTGCACGATCTGCAACAAGCCGTTCAGCAGGGGCGAGCACCTGATCAGACATTTGAAAGTGCATCAGACGGGCGGGGACAAGGAGGATAATTTGACGTGCTCGATTTGCGAGAAGACGTTCAGTAGGTCGGATCATCTGGCGCGTCATATCAAGATTCACTTGCTCCAAGATAAGCGGCACGTCTGTCCGGACTGCGGGAAGGCGTTCAATAGGTTGGATAATCTGAAGACTCACCAGAGGATCCATACGGGGATCAAGGATACGACGAAGCTGCATCTATGCATCTACTGCGGAAAGGAGTTCAATAATTCAAGCAATAtgATTGTTCACATGAGACGTCATACGGGAGAACGGCCGTATAAGTGCAGCCAATGTGGGAAAGGCTTCCCAAGATCTCACGATTTGAAATGCCACGAAAGGACTCATTCAGGCGAGAAGCCCTACCATTGCTCATTATGCGGGAAATCCTTCAATAAAAGCAACAAATTGTTGCGGCACACTCGGGTCCACACGGGGGAGCGTCCATACGTCTGCAACATTTGCGGGCGCGCCTTCACCCAATCGAATGATTTGGCGCTGCACATGCGCCGCCACACGGGCGCCCGGCCGTACGCGTGCGGCATGTGCCCCGCCCGCTTCATCCAGTCGGGCCAGCTGAAGGCGCACCGCCGCTCCACGGGCCACTGGATGGAGACCCAGCCCGACCTGAAGGGCGGCCACCGCGTCGAGCCCGTCACCCCGGTCATCGAGCCGGCGCCGATCCGCTTCAAGACGCACGGCAAGGCGAAGAAGGACGACGACCTGGACGAGGCCAAGTCGAAGCTGCTAGCGCAGACCGTGGGGCTGATGGCGCTGCAGGCGCAGCCGCTCGTGCTCGAGTCGAAGCTGGCCGAGCTGCACCACTCGGGCCTGATCGGGCTGGCCAAGGCCAGGGAGGACCACTCGTACCCGGCGATCAAGAGCGAGGAGGCGCCCAAAGGGCTCGAGGTGCTgatggcggcggcgccgccgaCGACGCTGCCGCCGCTCGGTGGCGGCACATTCCAGAGGGAGGCGGCGACCGTCACGTACTCGGTGGTGGCGCCGACCTGCACGGCCTTCACCGCCACCGATTACAGCTACCAGAATTATTGA
Protein Sequence
MINKPTELVIDKICRSCMSQHENMRNVFDSKELDGQTLQIADMLMNCASVAVSSGDGLPNLLCSNCENKLDVAYEFKQQCQKSDSTLRELTNNQSDDNIKEESLDIVVQPDFSIPGLFQESDDSEEDDEKSGKGKLSFSCPFCQKVLRTKKGLRIHQRRHTGDKLRACHTCDAQFTRTHHLIRHMKTHIKSTDAGHVCGQCGQSFMKLSHLLSHKKNHHKSDSGDKSDEAENGEQSNIQEIISDCDDVEFQDDGEDGDDDDDEDDDDDDDEDTNILDQYLKSKLKRGKKEKGAYECKYCFKIMTTFVGLKIHMRRHTGSDLSKCKLCDKTFTKTSHLKRHLQTHGIKEVEKPKATEKKVMECEFCDRKFKYKKSFNHHMQSEHGMSDESDVPLSAYVAKLNSDCANSKPKSKRAVAMENDGTGPPEEASTTRDPEASLLSDQEETTKEDSSSDTPVQQKPANHKVHTCHVCEAAFARANHLTRHMTLHRALLVHKCDRCDKAYATLEHLSKHVEEDHINKPYACTICNKPFSRGEHLIRHLKVHQTGGDKEDNLTCSICEKTFSRSDHLARHIKIHLLQDKRHVCPDCGKAFNRLDNLKTHQRIHTGIKDTTKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCSQCGKGFPRSHDLKCHERTHSGEKPYHCSLCGKSFNKSNKLLRHTRVHTGERPYVCNICGRAFTQSNDLALHMRRHTGARPYACGMCPARFIQSGQLKAHRRSTGHWMETQPDLKGGHRVEPVTPVIEPAPIRFKTHGKAKKDDDLDEAKSKLLAQTVGLMALQAQPLVLESKLAELHHSGLIGLAKAREDHSYPAIKSEEAPKGLEVLMAAAPPTTLPPLGGGTFQREAATVTYSVVAPTCTAFTATDYSYQNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-