Spla008185.1
Basic Information
- Insect
- Salpingus planirostris
- Gene Symbol
- ZNF236
- Assembly
- GCA_949788335.1
- Location
- OX460922.1:3683542-3688824[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 2.8e-05 0.0023 18.3 1.2 1 23 122 144 122 144 0.98 2 22 0.0029 0.24 11.9 0.2 1 23 150 172 150 172 0.97 3 22 5.9e-06 0.00048 20.4 0.3 2 23 178 199 178 199 0.98 4 22 0.00024 0.02 15.3 0.1 1 23 205 227 205 227 0.98 5 22 0.32 27 5.5 1.2 3 23 237 257 235 257 0.93 6 22 2.4e-05 0.0019 18.5 0.7 1 23 281 303 281 303 0.97 7 22 1.3e-06 0.00011 22.4 2.1 1 23 309 331 309 331 0.98 8 22 0.00014 0.012 16.0 0.3 1 23 337 360 337 360 0.96 9 22 0.0008 0.066 13.7 4.2 1 23 371 394 371 394 0.97 10 22 7.8e-07 6.4e-05 23.2 1.0 1 23 487 509 487 509 0.98 11 22 0.0011 0.093 13.2 3.7 1 23 515 537 515 537 0.98 12 22 0.00054 0.044 14.2 1.3 1 23 543 565 543 565 0.98 13 22 5.7e-06 0.00046 20.4 2.5 1 23 600 622 600 622 0.96 14 22 2.3e-05 0.0019 18.5 1.1 1 23 629 651 629 651 0.98 15 22 1.2e-05 0.001 19.4 3.0 1 23 903 925 903 925 0.98 16 22 0.00011 0.0092 16.4 6.9 1 23 942 964 942 964 0.98 17 22 4.8e-06 0.00039 20.7 2.0 1 23 970 992 970 992 0.98 18 22 1.9e-05 0.0016 18.8 1.7 1 23 1000 1022 1000 1022 0.98 19 22 0.1 8.2 7.1 2.5 1 23 1028 1051 1028 1051 0.93 20 22 0.00012 0.01 16.2 2.7 2 23 1198 1219 1197 1219 0.97 21 22 1.5e-05 0.0012 19.1 0.1 1 23 1225 1247 1225 1247 0.97 22 22 0.00014 0.011 16.1 2.9 1 23 1253 1276 1253 1276 0.98
Sequence Information
- Coding Sequence
- ATGGGAGAAAACAATATTAATAAGGAGCAACTAGCCACTTTCATCACTCTCCCAGTTGAGAGTTTCGAAAATAACCCAGTACAGATTTCTGAACCCTTCAATCTCAACAAAAACAACGTCCTATTTAAAAGTACAACAGATAGACAaatttatataataaatatcGATAATGTGAATCTAAATGATGTCAATGTGCTTCCTCAAGTATTAGAAACGCTCGGGATTTGCACGGAGAGTCTGATACAGCCTCGAAATGAAGTCACAGAACCTACAGCTAAAACGTTTATTGCTGATGAAGCTCCCAAAGCTCCTGAAATTCCGCAAATTGAAAATACTCCTCTCAGACCTAAACTGGCACCTCTTTACAAGTGCAAAATATGCGACGTGTCCTTCGACCGGGCCTTTTCGTACCGCAAACACGTCCTTTCTCACAAACTCGCCAAAAAGTTCAAATGCGATAAATGCGATGCCAGCTACAATATCGAAAGCAACATGAAGATTCACACGGCGATCCATTCCGAGGGCTCCCCCAAGTGCCCGATTTGCAATACCGAATTCAATCGGTGGGCGAGTCTGAAGTCTCATCTGTTGATGCACCAAATCGAGGAACTGTATGCTTGTGACGAATGCAAAGCCGAATTCGAGAAGGAAGACGAGTTGAGCAGGCATCTGCAGACGCATTTAGCCGCCAACAGTAACGAACTCTTCTGCTCGTTTTGCAAGCTGCAATTCGACGACTCGAGGACCTACAAGGAACATGTCAGCGACCACGCGAAGATCAGAAAGATGACTTCGACATGGAGGAGGGCGCGCCGAGTTCAGGGCAGTCGGGAGTACGCCCACGTCTGTGGGGTCTGCCGGAAGAGCTTCGCAAAGGCGTCGCTTTTGGAGCGCCACTCGAGGGTTCACAGCGGGGAAAGACCATTCGTCTGTCCCCACTGCAAGAAGGGTTTCAACCAGAAAGGGACGTTGCAGATCCACATGAGCAAGCACTCGGGGGAGAGGCGTTACGAGTGCACTTTGTGCGCGGCTAAGTTCACTCAAAAGGGGAACTTGAGGGCGCATGTTGAGAAGACCCACATTCCGCCGACGTCTCCGGATGTCAAGACGTACAAGTGCACTCACTGCCCttgcattttcaaaaagttggcTAGTCTAAATGTGCACATTACGAAAACGCATCCGATCGAAAAAGACGGTCCTGGCAATATCAGTCTATTGATGAATCAATTGAAAGATCTCGAGCAACAAACTTCCGCTTCTGCAGTTTCTGGAGCGAAGTTAACTGGCGAGAAGGATTTTGTTGCCGAacagaataaaaaaattatggaggaaattatcgaaaataaagcgAATGGTGCTGATAATATCAGTTATGTCCGATTAGCTGAATCGTTTTTGGATGGGTCGGTCAGGAGGTATCTGGTTAAGCAGAAGAAAGTGGGGGATGCCAAGGTCTACATTTGCAATTTCTGCAATAAGGAGTTCAAGAAACCGTCGGATTTGATCAGGCATACAAGGGTGCACACCAGGGAGAAACCTTTTAAATGTAAAGACTGTGGAGCAACGTTTTCTTTGAAATCTTCATTATATTGTCACGTTAAAACACACgctggaaataataattacgtttGTCCTTACTGCCTcaagaagttctccaccaTGAGATCCGTTAATTTACATGTAAAGAAACATGTAGAAGATGGTTCAGTTCTAAAACATAAGCAAATGGCCGACAAAAACCCTGAAAAAGATCAGACGTACGAAGATATAGTTGCTTCAACCGGaagtaaatatttcaattGCAAAATCTGCAACAAGAAATTCATATCTAGCTCGCTACTGAAAAAGCATTTGACCAATCACAGTAACTTCAGCAAAATCTACTCGTGTAATCAGTGCGATAAAACGTTTCCCTCGATTTCACAGAGGAGAAGGCATCTCGCCACTCACgacgaaaattcgatttctgaAGATAACACAATAATCGAACcagataatctgaaaatcaCCGAATTACCCGAGTTGATGGACGTTGAAGTGGATCCGATTTTGATGAGCGGTTTGAATCAGAACGCCCTCGAAGATCCCGGCCAATCGGATCAAATTGAGCAACAAATGTACGAAATTCACTCGGGGCCCATTGATAATAATCCTCAAGAAGGAGGGGGAGACCCGAATCAAATCCAAACGATTTTCATCAACTTGCCTCAAGATAACTCGAATAATTTGTATCCGAAAATGCAGAGCAACGATTCGTTACTTTTCAACACTCTTGGGGATCTTTCCGATGTTAATGTCTTCAATATCGATCAATTGAGTGGCGACTTAGAAACTCAATCGCCTTACGTCTATCCCAATcagattttcaataattttctaaatagtTCCACTCAAAAATCCCCTGAATCACAGAAGGTGGCCGAAAAAGCTCCATTACTCGATTTGAATTTGGCCTTAAATGGGGTCGATCAATCGTTCCCTGTAAACGTCAGCATTTCGTCCCCTAATCTAATGACGAATTTGGTCGATTCCCAAGAAGGTGCTAACGTTTTTGGACTTGAACCAAACTTCATCAACAATTTGGAACCCGATAATAATCCAGCCGAGGATTTGCAGAAAGTTACTGAAACACCAGAGGACGATAACACTTCAGGAAGCGAATGGAACATCAAACACCCACCAGTTAGaccgaaaaagaagaaattcACTTGTCCCCAGTGTAAAAAAGTATTCGCCAGTAAAAACACCTTCAACAGACATTCAAAAACGCACGTCAATACCAGCAATAAGGGCGAAGATAACCTTCAAGTGGTCTCCCTTCATCAGTGCACCTCTTGCTCGAAAGGTTTCAAGAAGCATTCAGATTTGAAAAGACACGTACGGACGCACACGGGTGAGAGGCCGTTCCCTTGCGACAAATGCGAGAAGAAATTTTCGCTAAAGTCCACTCTTTTGTCGCATCAGAGGACACATAATCCGATTAGTCACAAAAATTATAACTGTTCGGTTTGTAACTCGTTCTTCACGTCGAAATCCAGTCTAAAAGTCCACATGAATCTTCACACAGGGCTAAAACCTCATCAATGCGCCTTTTGTCCTATCAAATTCAGGACCGCTGCTCATAAAAAGTCGCACGAAGCCAGTCAGCATTCTAATTCGTCTCGTAATAAGAAATCGCAACCGAAGAAAGTTACGAATCTGTTGGCCACTGTAGCTATGGACGCCGTCAACTCACAGGATCCTACTTTACCGGCCGAAAACATGTCTGATAACCAGGATTTACTTGAGAATATTCTGGTGCTGCAAGATCAGGGCCAATTGACTGCGACCGATTTGAACTTTCCTTTATCTGAGCCAATTCAACTTGATCCGGCCATTTTGCAGCAGTTACAATCGTCGAATTTCTCGTTTCAAGATCAGCTGATTACGTCATTAATTCAGCTGGAAAACGGAACTTTACTCAATATCAGGACGGACAGTAACGGCGATGCGCATTTTGAGGATTTGAATAATCCActgattaacaataataaggCGGTTGTCGTTCCTGATAATAGTGAAGTCGTGGTGGAAAAACCGAGGAATTTGGAGTGCGAAATCTGCCATAAGAAGTACGCATCTAAAGACGTCCTGCGTAAACACAAGAAAACGCACGGAATTTTCCGGAAATTCCCCTGCAGTAAATGCGACAAGGGCTTCGACACTGAGGACGCTTTGGAGAAACACGAGAAAGTGCACGCGGGATATCGGCCTTTCACTTGCCAGATATGCGATaacagtttttcgaaaatgcaCAGTCTGGCCACCCACATGAAACGAATGCACTCGCAGAAAAGCAAAGTCGAAAACGACAATTTCAAACCGAACCTGGCGAAAATAATCCGAACTTATCTCATACCGTAA
- Protein Sequence
- MGENNINKEQLATFITLPVESFENNPVQISEPFNLNKNNVLFKSTTDRQIYIINIDNVNLNDVNVLPQVLETLGICTESLIQPRNEVTEPTAKTFIADEAPKAPEIPQIENTPLRPKLAPLYKCKICDVSFDRAFSYRKHVLSHKLAKKFKCDKCDASYNIESNMKIHTAIHSEGSPKCPICNTEFNRWASLKSHLLMHQIEELYACDECKAEFEKEDELSRHLQTHLAANSNELFCSFCKLQFDDSRTYKEHVSDHAKIRKMTSTWRRARRVQGSREYAHVCGVCRKSFAKASLLERHSRVHSGERPFVCPHCKKGFNQKGTLQIHMSKHSGERRYECTLCAAKFTQKGNLRAHVEKTHIPPTSPDVKTYKCTHCPCIFKKLASLNVHITKTHPIEKDGPGNISLLMNQLKDLEQQTSASAVSGAKLTGEKDFVAEQNKKIMEEIIENKANGADNISYVRLAESFLDGSVRRYLVKQKKVGDAKVYICNFCNKEFKKPSDLIRHTRVHTREKPFKCKDCGATFSLKSSLYCHVKTHAGNNNYVCPYCLKKFSTMRSVNLHVKKHVEDGSVLKHKQMADKNPEKDQTYEDIVASTGSKYFNCKICNKKFISSSLLKKHLTNHSNFSKIYSCNQCDKTFPSISQRRRHLATHDENSISEDNTIIEPDNLKITELPELMDVEVDPILMSGLNQNALEDPGQSDQIEQQMYEIHSGPIDNNPQEGGGDPNQIQTIFINLPQDNSNNLYPKMQSNDSLLFNTLGDLSDVNVFNIDQLSGDLETQSPYVYPNQIFNNFLNSSTQKSPESQKVAEKAPLLDLNLALNGVDQSFPVNVSISSPNLMTNLVDSQEGANVFGLEPNFINNLEPDNNPAEDLQKVTETPEDDNTSGSEWNIKHPPVRPKKKKFTCPQCKKVFASKNTFNRHSKTHVNTSNKGEDNLQVVSLHQCTSCSKGFKKHSDLKRHVRTHTGERPFPCDKCEKKFSLKSTLLSHQRTHNPISHKNYNCSVCNSFFTSKSSLKVHMNLHTGLKPHQCAFCPIKFRTAAHKKSHEASQHSNSSRNKKSQPKKVTNLLATVAMDAVNSQDPTLPAENMSDNQDLLENILVLQDQGQLTATDLNFPLSEPIQLDPAILQQLQSSNFSFQDQLITSLIQLENGTLLNIRTDSNGDAHFEDLNNPLINNNKAVVVPDNSEVVVEKPRNLECEICHKKYASKDVLRKHKKTHGIFRKFPCSKCDKGFDTEDALEKHEKVHAGYRPFTCQICDNSFSKMHSLATHMKRMHSQKSKVENDNFKPNLAKIIRTYLIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -