Rfun016178.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- nfxl1
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000009.1:35534560-35543432[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2 6.3e+04 -7.8 5.6 15 19 162 166 161 166 0.81 2 19 0.13 4.1e+03 -0.3 0.4 4 10 197 203 196 203 0.95 3 19 3e-08 0.00095 20.9 17.0 1 19 211 228 211 228 0.99 4 19 1.4e-08 0.00044 22.0 18.8 1 19 264 282 264 282 0.99 5 19 0.7 2.2e+04 -2.7 1.9 6 10 307 311 306 311 0.90 6 19 9.2e-08 0.0029 19.3 9.2 1 19 317 335 317 335 0.97 7 19 0.84 2.7e+04 -2.9 0.9 6 10 360 364 359 364 0.86 8 19 7.8e-07 0.025 16.4 12.1 1 18 370 387 370 388 0.97 9 19 1.1 3.5e+04 -3.3 0.2 1 4 397 400 397 401 0.87 10 19 5.5e-05 1.7 10.5 17.1 1 18 422 439 422 440 0.94 11 19 6.9e-11 2.2e-06 29.3 12.3 1 18 449 466 449 467 0.98 12 19 0.59 1.9e+04 -2.4 1.0 5 10 495 500 495 500 0.94 13 19 0.0012 39 6.1 6.8 9 18 515 524 513 525 0.89 14 19 0.0069 2.2e+02 3.8 4.4 1 12 535 545 535 545 0.90 15 19 2 6.3e+04 -4.8 3.4 14 18 573 577 573 578 0.84 16 19 0.00052 16 7.3 5.2 1 11 614 624 608 625 0.92 17 19 1.2e-05 0.37 12.6 18.7 3 19 655 671 653 671 0.94 18 19 6.8e-07 0.022 16.6 11.5 1 16 714 728 714 734 0.93 19 19 1.9 6e+04 -4.0 1.2 6 10 764 768 763 768 0.86
Sequence Information
- Coding Sequence
- atgCATGGAAGACATAAATCGTCAAATCCttggaataaaaatatagagAAGAAAACCAAACCAACATTACACAACCTAAATAAATCACCAACTCcttctgaaattaaatttaaggaaGCCCAGTCAAAATTACAGGCAGCTGTtcaaaaacatgtaaaaaattacGAATCCTCTTCTGAGGAAGAAGAATTAGAATCGGCTAATGCAATTGaggATATATTGAAAACCTATAAAAACTCAGGAGGTACAAACGAACATCTTGGGCGGACACAGTCATTTATTGAGGAAACATTCCTCTCGGGTGCAGCAACTTGCCTTATTTGTATATCAAGAGTTAAGCGGGATGATATGATATGGAGTTGTATTAGCTGCTATGGATTTTTTCATCTCATGTGCGTCCAGCGATGGTCTAAAGATACTATAACTCATCAGAAACAAGCTTTAGCGGACCTTTTAGTTCAAGAAAAAAAACTCTGTTGGTGCTGTCCAAAATGTCGATATGAATATTCATCAGAAGACattccaaataaatatttatgtttttgtgggaaagcagaaaatccaaagTTCCATCCATATTTAGTTCCTCATTCATGTGGTGAAATCTGTAAAAAGGACTTAATACCTAACTGTGGGCATAAGTGTTTACTACTTTGTCATCCAGGTCCATGTCCTCCATGTCCAGTAACTGTAAGTGCATCTTGTTACTGTGGATTTCAACCACCTAAAGTTCAAAGGTGTAGCAACAAAGAATGGTCTTGTGGAAATTTATGTGGAAGAACATTAGAATGTGGGAAACATACTTGCACCAATCCTTGTCACCCAGGAAAATGTAAACCATGCCCCAAAAAGAGTATACAAAAGTGTATGTGTAAATCACAACAAAAACTACGTGACTGTGCTGCCCCCTTTTGGCAATGTGAAAAGGTGTGTAATAAACCACTGAAATGTGGTAATCATACTTGTCAAGTTATCTGCCATGCTGATGAATGTGATGACTGTCAATTAAATCAACCTAGGACATGCCCATGCGGTAAAACAAGTTATCAACTACCATGCACTGAAGATACACCAAGTTGTCAAGATACATGTGATAAGCTCCTTGATTGTGGAATCCATACTTGCAACCAGAGATGTCATAAAGATAAATGTGGCcagTGTCTGGAAACTGTTGTGAAATCATGTAGATGTGGTGTTCATTCGAAGGAGGTTCAATGTTACAAACCTTATTTTTGCGAAACCAAATGTAAGAATATGAAAGATTGTAATAAACATCCCTGTAATAGAAAATGTTGCGATGGTAATTGCCCACCTTGCGAAAAACCTTGTGGGCGCACATTAAGTTGTGGAAACCATAAATGCAATTCGGTGTGTCACAGGGGTCCTTGTTATCCATGTGCTCAAACAGATGAGGTATCTTGTAGATGCGGATCAAGTAGAATTAGAGTACCTTGTGGGcgtaaacaaaaaacaaaaccaCCTAAATGTAATAAACTTTGCTCATTACCGCCGGACTGCCACCATGAAAAGAGAGAGAATCATAAATGCCACTTTGGTGATTGCCCTTCATGTCatcaaatatgtaataaaataggGACAACTTGTTCGCATCCTTGTATTGCGCCGTGTCATTCTTCTGTTCTTGTAAAAATCGAAGGAGAAAAAGCTTCTATGCCTTGGGAGCAGAAGAAGCCACAAATTGAGAAGAGAGCCTTACCATGTCCCGACTGTACTATACCAGTACCAGTTACATGTCTAGGTGGGCATGAGATGGCAGATTGGCCATGTCATTTAGCAAAACCATCAAGTTGTCATCGTCCCTGTGGGAGATTATTAGAATGCACCAATCATACTTGTACTTTGCCCTGTCACATTGTAGAATCTGCACCAGACGAAAATAAGGCTGGAACCAATTGTGAACAGTGTGGAAGTAGTTGCACAAAAGAAAGACCAGAGGGATGCCAGCATCCTTGTCCAAGGCCTTGTCATTTGGGGCCATGCCCTCCATGTAAAGCTATTATAAGGATAAAATGTCACTGCCAGCTTAATCAACCATATGTTAGTTGTAGCGACTGGCTCGATCCTGAGAAAAGGGAGGAACTGCAAAGCTGTGGAAATCAATGCCCGAAGAATTACATTTGTGGACATAGATGTAAATCAAACTGCCATTCAGGGCCTTGTCCTAATGCAGAGTTATGCAAAAAGAAGATTAAAGTTTCATGTAACTGTAAACGCATTAAAAAAGAATTCTCTTGTGAAACTGTCCGGAAAAATTTAGCTATTGTGGAATGTGATGAAACTTGCTTAATAAGAAAGGAAGAAGAGAAAAAACTGAAGGATGCAATTAATGAGCAGAAAAGACAGGAAGAAGAATTGAAAAACaagaaggaattagaaaaatatcagaaaatgtTTGAAGGAAAAAAGAAGAGTAGGATTAGAAAAACATATGAAGACAACGAAGAAATTAGTTTAATTCAAAAGTActggtatattttattatttctgttaatcgTAATTGTTTCTATCACAATACGATATGTCCTTTATGGTTAA
- Protein Sequence
- MHGRHKSSNPWNKNIEKKTKPTLHNLNKSPTPSEIKFKEAQSKLQAAVQKHVKNYESSSEEEELESANAIEDILKTYKNSGGTNEHLGRTQSFIEETFLSGAATCLICISRVKRDDMIWSCISCYGFFHLMCVQRWSKDTITHQKQALADLLVQEKKLCWCCPKCRYEYSSEDIPNKYLCFCGKAENPKFHPYLVPHSCGEICKKDLIPNCGHKCLLLCHPGPCPPCPVTVSASCYCGFQPPKVQRCSNKEWSCGNLCGRTLECGKHTCTNPCHPGKCKPCPKKSIQKCMCKSQQKLRDCAAPFWQCEKVCNKPLKCGNHTCQVICHADECDDCQLNQPRTCPCGKTSYQLPCTEDTPSCQDTCDKLLDCGIHTCNQRCHKDKCGQCLETVVKSCRCGVHSKEVQCYKPYFCETKCKNMKDCNKHPCNRKCCDGNCPPCEKPCGRTLSCGNHKCNSVCHRGPCYPCAQTDEVSCRCGSSRIRVPCGRKQKTKPPKCNKLCSLPPDCHHEKRENHKCHFGDCPSCHQICNKIGTTCSHPCIAPCHSSVLVKIEGEKASMPWEQKKPQIEKRALPCPDCTIPVPVTCLGGHEMADWPCHLAKPSSCHRPCGRLLECTNHTCTLPCHIVESAPDENKAGTNCEQCGSSCTKERPEGCQHPCPRPCHLGPCPPCKAIIRIKCHCQLNQPYVSCSDWLDPEKREELQSCGNQCPKNYICGHRCKSNCHSGPCPNAELCKKKIKVSCNCKRIKKEFSCETVRKNLAIVECDETCLIRKEEEKKLKDAINEQKRQEEELKNKKELEKYQKMFEGKKKSRIRKTYEDNEEISLIQKYWYILLFLLIVIVSITIRYVLYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -