Basic Information

Insect: Rosalia funebris
Gene Symbol: -
Assembly: GCA_037954035.1
Location: JAZFAV010000019.1:4741635-4755976[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.15 18 7.8 0.2 1 23 355 377 355 377 0.98

2 13 2.9 3.4e+02 3.7 1.3 1 19 417 435 417 439 0.92

3 13 0.085 10 8.5 5.6 1 23 448 470 448 470 0.99

4 13 0.43 52 6.3 3.0 1 23 668 690 668 690 0.98

5 13 0.03 3.6 10.0 1.2 1 23 699 721 699 721 0.96

6 13 0.0011 0.14 14.4 1.6 1 23 730 752 730 752 0.98

7 13 0.039 4.6 9.6 1.2 1 23 792 814 792 814 0.99

8 13 0.0013 0.16 14.2 2.4 1 23 823 845 823 845 0.99

9 13 2 2.4e+02 4.2 3.9 1 23 854 876 854 876 0.97

10 13 0.41 49 6.4 3.7 1 23 885 907 885 907 0.98

11 13 0.0085 1 11.7 2.3 1 23 944 966 944 966 0.97

12 13 0.00027 0.033 16.4 5.5 1 23 975 997 975 997 0.99

13 13 0.029 3.5 10.0 2.5 1 23 1020 1042 1020 1042 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.15	18	7.8	0.2	1	23	355	377	355	377	0.98
2	13	2.9	3.4e+02	3.7	1.3	1	19	417	435	417	439	0.92
3	13	0.085	10	8.5	5.6	1	23	448	470	448	470	0.99
4	13	0.43	52	6.3	3.0	1	23	668	690	668	690	0.98
5	13	0.03	3.6	10.0	1.2	1	23	699	721	699	721	0.96
6	13	0.0011	0.14	14.4	1.6	1	23	730	752	730	752	0.98
7	13	0.039	4.6	9.6	1.2	1	23	792	814	792	814	0.99
8	13	0.0013	0.16	14.2	2.4	1	23	823	845	823	845	0.99
9	13	2	2.4e+02	4.2	3.9	1	23	854	876	854	876	0.97
10	13	0.41	49	6.4	3.7	1	23	885	907	885	907	0.98
11	13	0.0085	1	11.7	2.3	1	23	944	966	944	966	0.97
12	13	0.00027	0.033	16.4	5.5	1	23	975	997	975	997	0.99
13	13	0.029	3.5	10.0	2.5	1	23	1020	1042	1020	1042	0.97

Sequence Information

Coding Sequence: ATggagaagaaaagaaaatatggaGAGTGGGCGGAGGAGGACATGGAGAATGCCATAAAAGCTTACAGAGGAGGTCAATGCGGTCTAAACGAGACTTGTCGAAACTTCAATATTCCAAAGCCAACATTAAAAAGACATTTATTATCTACAAACCTTAGACCCAATGAAAACAACAAAGTATTTGGGCGTACAACAACTTTGTCTGAAGAGCTGGAAAATCAGCTGGTAgctcatattttaaaactagaaGAATTTTTATTGGTTTATTTGGGGTATTCTACTGTACAAAAGAAGAATAGGAAAATACTTGCCCAAAAAGGAAAAATTCAAATTGGTGTTCTAGCAAGCGGCGAGCGTGGAACAAACACTACAGTTGTTTGTTGTGTTAATGCTGCTGGGGCTTACATTCCCCCTATGatcatttttaaaagaaaaagactTTGTAACGAATTAAAAGCGGGTGCTCCACCGGGTAGTATTTTAGATATATCTGATACAGGATATATCAATTCgacattatttgtaaaatggTTAAACCATTTTGTCAGCTTTGTTCCAACACGACCACATGGAGAAAAGTGGTTACGCACAAATCCGGGTCTATGTGTAACCCAATTTCAACCATCTCAACTAGTAGCAGAGGCTTATAGTAAAGCAGCCACTATCAAAAATGCGATAAGCGGATTTCGCGGAACAGGAATATGGCCTGTTGATCGTCATATTTTTAAAGACCATCAATTTGCTGCATCGGaacttcttcaacaatgtgAAAATTATACCACTGAAGTAGACTTGCCAGTTTTAAGACAATCTCAAACATCAGAGCCAATTGAAAACCAAGAAAATGCAGACCTCAATACAACAGAACTAGAAAGACCGACAGAGAGTGTGGCTgtatACAAAGTCATTGAATCTACGTGTCTATCaccaatacaaaaaaaatctgtCGAGCAACTGAAAAACTCACATAATGCTACGGAAATAAGGAATACGGGAGATAACGCCGAgGACAACCTGCACAAACATGTGTTAGTTCACAATGACATTTCAGaagtgaaaatatacaaatgtgAAGTATGTACTTCTGCGACAAAGTACAAAATCTCGTTAGAGGGACACGCGTTGACTCACAAGCACGCCTCCGAAGTGGAGACGTTCAAGTACGGATCGTGTACGTTCGTGACGAAATACAAGCGTACCGCGAAGCGGCACGCGCTGACGCACAAGGATGcttctgaaataaaaatgtataagtgCTCTCTTTGTCCGTACAAGACGAAGTGGAAGAATCAGCTGAAGGAGCATGACCTGAATCACAAGGACACGTCCAAATTGGAAATGTACAAGTGCTCCGCATGTAGTTTTCAAACTAAGCGTAAGCACTACGTCAAGCGGCACATGTTGACGCACAATGCTTCTTTTGCTGTTAACAGAATAGAGGCTGGATTTGAGCTGAACGATTTGATCTGTGATAAAAGAGACACAGAATTGGCGGTTGAAGCAAATTTTAGGTGTCGATTCTGTATGAATCCGACAAAAGATTTTGTCTGCATAGAAACTTTAATGGAGGAAGCATTATATAAGAAGATGTTACCAGTATTTATGCCAGAAGTGGACATCAGTGTGGTTAAGAATCCCATAGTTTGTACTACTTGTAAAGACGACTTAGACTGTTACATTGTGTTAATAAGGAACTTATTAGACATAGAAGATAAAATCTGTATGTATCGCCAAAATATCAGATTACATGGAGTTAAGTCAGAGgatatattacattttctgAGTAGTAACCACAGAGAATTAACCAAGCCTAAAGAACTGGATGTGTATTCTTGGGAATCAATGAAGACTGAAGAAATATTACATATCAAAGATGAGGAAGTATCGGATGAGGATGCGTATACCCATAAGCAAAATAATCTTGTGCAATTTCATATAAGTTCACAAAGTGATACGTATACTTCTAATGTATCGACATGTAAAACAACAGATCGTTTAAAGCACAAATGTACATTGTGTACATATGCCACGAAATACAAACGTTTGATAATGCAGCATGTGTTAACTCACAAGGATCATTCGGAAATGGACATGCATAAGTGCCCGGACTGTCCCTACATCACAAAGTGGAGGGCCCACTTTCAAAGACACATAGCAGCTCATAGGGATCCCTCAGAAACTGAAATGTATAAATGCGAATCGTGTACGTATACGACAAAATACAAGGCTTCTTTACAACGACATGCCATCACCCACAGGGATGCTTCCGAAGTACAGACGTATAAATGTATGCACTGCTCCTACGAGGCCATGTGCAAGCGCTACCTTAAAAGACATATGCTAGTGCATAGATATGACTCggaattaaaaatgtacaaatgtgAATTATGTGCTTACGCGGCAAAACACAAAAGTGACATACAGCAACACACGTTAACCCACAAGGATGCTTCCAAAGTAGAGACGTACAAATGTACGCAATGCGCTTACGAGACTAAGCGCAAGCGGTATCTTAAAAGCCACATGTTGGTGCATAAAAGCGCTTCAGAAGTGGAAATGTACAAGTGCGGATGCTGTAGTTATAAGACGAAATACAACAGGTCGTTACAGCAACATGTGTTGATCCACAAGGACGCCTCGGAAGTAGAGACGTACAAATGTTCCCACTGCCTCTACGAGACCAAGTGGAAGCGCTATCTTAAAAGTCATATGCTGGTACATAAGAACGGGACAGAtggaaaaactaataaatacaaattgtcCGCTTCTGCCGCGGAATACAAACATAACCTACAACATACGTTAAGTAACGGGGATGTTTCAGAAATGTACAAATGTTCGATTTGTCCTTATGAGACCAAATGGCAGAGCCACCTCAAGAGACATACCGTCAGCCACAAGGACGCCTGCGAGCTGGAGATGTACGTGTGCGGCATCTGCGAGTGTCAGTTCAAGCACAAACAGAATATGAAGCGTCACATGTTGACCCACAGGGACCGTTCTGAATCGGAAATGCAGAATATGTTAATTCACAAGGATCTTTCAGAAGTAGACATTCACAAGTGTTCAGACTGTTCCTACAGCACGAAATGGAAAACTGACCTTAAAAGACACGTATTAGTCCACAAAGACGCCTCAGAAGTAGAAATATACAAATGCGAACTATGTACTTACACTATTTTACAACGACACGTCAACGCGTGTCGTTGTAAAACCAACAACACCCACAAAGACGCTTCCGAGGTAGAGACCTACAAGTGTACGTGTACAATGTCTGTATGA
Protein Sequence: MEKKRKYGEWAEEDMENAIKAYRGGQCGLNETCRNFNIPKPTLKRHLLSTNLRPNENNKVFGRTTTLSEELENQLVAHILKLEEFLLVYLGYSTVQKKNRKILAQKGKIQIGVLASGERGTNTTVVCCVNAAGAYIPPMIIFKRKRLCNELKAGAPPGSILDISDTGYINSTLFVKWLNHFVSFVPTRPHGEKWLRTNPGLCVTQFQPSQLVAEAYSKAATIKNAISGFRGTGIWPVDRHIFKDHQFAASELLQQCENYTTEVDLPVLRQSQTSEPIENQENADLNTTELERPTESVAVYKVIESTCLSPIQKKSVEQLKNSHNATEIRNTGDNAEDNLHKHVLVHNDISEVKIYKCEVCTSATKYKISLEGHALTHKHASEVETFKYGSCTFVTKYKRTAKRHALTHKDASEIKMYKCSLCPYKTKWKNQLKEHDLNHKDTSKLEMYKCSACSFQTKRKHYVKRHMLTHNASFAVNRIEAGFELNDLICDKRDTELAVEANFRCRFCMNPTKDFVCIETLMEEALYKKMLPVFMPEVDISVVKNPIVCTTCKDDLDCYIVLIRNLLDIEDKICMYRQNIRLHGVKSEDILHFLSSNHRELTKPKELDVYSWESMKTEEILHIKDEEVSDEDAYTHKQNNLVQFHISSQSDTYTSNVSTCKTTDRLKHKCTLCTYATKYKRLIMQHVLTHKDHSEMDMHKCPDCPYITKWRAHFQRHIAAHRDPSETEMYKCESCTYTTKYKASLQRHAITHRDASEVQTYKCMHCSYEAMCKRYLKRHMLVHRYDSELKMYKCELCAYAAKHKSDIQQHTLTHKDASKVETYKCTQCAYETKRKRYLKSHMLVHKSASEVEMYKCGCCSYKTKYNRSLQQHVLIHKDASEVETYKCSHCLYETKWKRYLKSHMLVHKNGTDGKTNKYKLSASAAEYKHNLQHTLSNGDVSEMYKCSICPYETKWQSHLKRHTVSHKDACELEMYVCGICECQFKHKQNMKRHMLTHRDRSESEMQNMLIHKDLSEVDIHKCSDCSYSTKWKTDLKRHVLVHKDASEVEIYKCELCTYTILQRHVNACRCKTNNTHKDASEVETYKCTCTMSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01310364;
90% Identity: iTF_01310364;
80% Identity: iTF_01310364;