Basic Information

Insect: Rosalia funebris
Gene Symbol: chn
Assembly: GCA_037954035.1
Location: JAZFAV010000036.1:934242-942111[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00081 0.097 14.9 0.7 1 23 269 291 269 291 0.98

2 8 0.002 0.24 13.7 4.0 1 23 297 320 297 320 0.96

3 8 0.0032 0.38 13.0 4.2 1 23 411 433 411 433 0.99

4 8 0.17 21 7.6 0.1 1 23 437 460 437 460 0.96

5 8 6.4 7.7e+02 2.6 0.1 3 23 465 486 464 486 0.93

6 8 0.035 4.2 9.7 1.0 1 23 632 654 632 654 0.98

7 8 8.7e-05 0.01 17.9 0.8 1 23 677 699 677 699 0.99

8 8 0.26 32 7.0 5.6 1 23 811 834 811 834 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00081	0.097	14.9	0.7	1	23	269	291	269	291	0.98
2	8	0.002	0.24	13.7	4.0	1	23	297	320	297	320	0.96
3	8	0.0032	0.38	13.0	4.2	1	23	411	433	411	433	0.99
4	8	0.17	21	7.6	0.1	1	23	437	460	437	460	0.96
5	8	6.4	7.7e+02	2.6	0.1	3	23	465	486	464	486	0.93
6	8	0.035	4.2	9.7	1.0	1	23	632	654	632	654	0.98
7	8	8.7e-05	0.01	17.9	0.8	1	23	677	699	677	699	0.99
8	8	0.26	32	7.0	5.6	1	23	811	834	811	834	0.83

Sequence Information

Coding Sequence: ATGGAAGTGGCTATGCCAATGTCTGGCAGCGCCATCGACTGCTATGAAGACATGTTCAAGGAGATAACACGAAAACTATACGGCGAAGATGGTCTGCCTGATCTAAGTGCCAACGACAGATTAACGTCAACAAGCCAAGACCGAGGATTGACTTCTATCGACTACGAAGTAGATAATCCCATTTTAAAGCCGGAAGAACATTTAACCGCCTTTGGTTTGGCAGCACTGATGCAAAATGGATTTCCGCCTACAGGCATCCTAAATTCTGGGTTTCAAGCACATAAACCTAACGCGGGAGTCATTCTGGGCCCAGTTTTAGAAGACAAATGGGTTAGCAGCGAGGATAACCTGCAGTGGACGCAATCTAAAATTGCAACTTATAATCcctctcaaaaattatttagatgcaCAGAGTGTGACTGCGTAGGGTATCTTTTGAGAGTGGCGGAACACTGGCTTGGCACTCATTCTTCTCTACGAGCATTCCACTGTCCTCAATGCCCCTATGAAAGCGCATGGGCTCGATGTGTTAGGATACACCTGAGTCGACAACACAATATAAATACCGACGAATCCTGCGACACATTAACGAAAGATAACCCAGTTTTGCAAGAGATAGTAAAGTATTTGCAGCGACTAAAGAACAAACTTGAAAATAATTGCGGAAAGACGGCACAAGGAACAGTTTCTCAAAACGACGATTTTCACAATCAAGCTATAGCCAGTTCGTCCAACGTTTCAGCGGCAAGTCAGGTGGGAACTTCACCAACTATTAATACGGACCAAAATATCGCAAGCAAAAGATATAGTTGCACATATTGCCCGTACGCAACCGACAGAAGGGACCTCTTTACTCGGCACGAGAACATTCACCGGGAAGAGAAACCATTTCAATGTTACGTATGCCAGAAACAGTTCAACAGAGCCGATCATGTTAAAAAGCATTTTCTTCGAATGCATCGGGACCATCCTTACGATTTGAATAGAATTCGACGACATCCCCCAAAAAATGCTTCTGGTATGTCTTATTACCAAAAATACAACTCTAATTCACCGAATCAACAAACGGAACCAATAAACTCATTAACAAATATAAGTTCTTTGTCCATTCCTGGATTCAACAATATGTCTAGGAGCCTGTCAAATTCGCGGGTTCAGCCTGACGCGAAGAGCGCCGATAAAACTGGCACCTCTTTAAAGAGCAGTGGGAAAAAGAAAGGTGAAAAACGGTTTACTTGCTGTTATTGCTCTTGGTCTGGTGTTGATAATTGGTGCCTTAAGCGACATATGAACACCCACCTAAAGCCTTTTGTGTGCGGCCTTTGCGACTACAAGGCTGCAAGGTCTGAGAGGTTAGCCACTCATGTCCTCAAGGTTCACAATAAAAGAGCATGTGGAAAATGTAATTACTTAGCTGACGATTTAACCCAGTTGTCAGTACATCAACAGGAGCGACACCCTCTGGAACAAAGAAACCGATCCAGCAATAATAATGTATTACGGACAAATACCAACACGTTCAATGGCAGTCCATCATCTTCTACTTCATCTAATTGTGTAGCCACTAACAATTCACCTCCTTGCAGCCAAAATCAAGGACTTCTTAAAACTCACGACCTCAGCACTGCCGCTGCTCTTCTGCAACAGAGTAATCGCTTCTTGCAGACTGAAGTGAAATCGTGGAAAAGTCACATGCCGAAGCAACATGGAGCGGCGCGCCTTTTTAACTACATGGAAGCAAGCGATGGGTCGGACCCGGAATGCGAGCCACGGCCCGCAGAAGACATGAATAGAGTTAATTTAGCCCACAGGATCCAGTCGGATTTTCCTGAGGCGGGAGATGTTGGTAACCAGGCTGACGAGGAGAACGGGGAAGAAATGGAACTCCCTCTATTTGTCTGCCTTACGTGCGGTTGCGAATTCGAAGATGATCTATCCCTTGAGACACATCAATATACGCACCGACACAACACCTCATCTCCCGCCAAACCGAGCGACTCCAAGGAGAACGTTGATCCCGATCTAAAATACCGATGTTGTTTATGTGATGCTGTATTTAGTAATCAATATTCTATTATGGCACACATGATGGTACACTCTAGTTTGGCAACAAACCCCCTGGCGCCTTCAACGGTGCGCTGTAAACGTCCTAGGAAGCAGAGCCGACCCAAGAAGTTGGTTCTACCATTTTGGGATTCCGACGAGGTGGAAGTTCTGAGACATCTGAACGGTAAACTTCGGAAATGGCGCGGAGCGTTGACAATGTCGAAAGACAGCATTGGAATCAGTAAGTTAGTCGATAAGTACATGGCGCAGCTGGTAACCAGACCTGGTTTAACTTGCATTTGGTGTAAAAATGTTGGATTAAGCCGATACCACACAAAAGGTAGCCTGGCTCTCCATCAGTACTGGAGGCATTCCAAACGGAAGTATCGTTGTGAGCACTGTGACATGGTTTTTCGACATCGATACCAATGTGTGTTACATAGCAGCCGAGTGCACACAAATCAGAAGACTCAATTAGTGCCTGTGACGCATGCCAAAGAAACAAATCACTTGGCATTAGGTGCTGAATCTGTCTGCTCTTCCCATTCACAAGATACCGGTCATTTTCTTGGCAACTCACATACCGTATACGTACCTGATTCAACAATGTCTAATGCGCATAAATTGGGAATGCCCTTTTTTGACCATTCTTTTATACATTCTACCACAACTATTAATAATCATATGCCAATTATTATTCCGACCTTCCCGCccaattga
Protein Sequence: MEVAMPMSGSAIDCYEDMFKEITRKLYGEDGLPDLSANDRLTSTSQDRGLTSIDYEVDNPILKPEEHLTAFGLAALMQNGFPPTGILNSGFQAHKPNAGVILGPVLEDKWVSSEDNLQWTQSKIATYNPSQKLFRCTECDCVGYLLRVAEHWLGTHSSLRAFHCPQCPYESAWARCVRIHLSRQHNINTDESCDTLTKDNPVLQEIVKYLQRLKNKLENNCGKTAQGTVSQNDDFHNQAIASSSNVSAASQVGTSPTINTDQNIASKRYSCTYCPYATDRRDLFTRHENIHREEKPFQCYVCQKQFNRADHVKKHFLRMHRDHPYDLNRIRRHPPKNASGMSYYQKYNSNSPNQQTEPINSLTNISSLSIPGFNNMSRSLSNSRVQPDAKSADKTGTSLKSSGKKKGEKRFTCCYCSWSGVDNWCLKRHMNTHLKPFVCGLCDYKAARSERLATHVLKVHNKRACGKCNYLADDLTQLSVHQQERHPLEQRNRSSNNNVLRTNTNTFNGSPSSSTSSNCVATNNSPPCSQNQGLLKTHDLSTAAALLQQSNRFLQTEVKSWKSHMPKQHGAARLFNYMEASDGSDPECEPRPAEDMNRVNLAHRIQSDFPEAGDVGNQADEENGEEMELPLFVCLTCGCEFEDDLSLETHQYTHRHNTSSPAKPSDSKENVDPDLKYRCCLCDAVFSNQYSIMAHMMVHSSLATNPLAPSTVRCKRPRKQSRPKKLVLPFWDSDEVEVLRHLNGKLRKWRGALTMSKDSIGISKLVDKYMAQLVTRPGLTCIWCKNVGLSRYHTKGSLALHQYWRHSKRKYRCEHCDMVFRHRYQCVLHSSRVHTNQKTQLVPVTHAKETNHLALGAESVCSSHSQDTGHFLGNSHTVYVPDSTMSNAHKLGMPFFDHSFIHSTTTINNHMPIIIPTFPPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01227902;
90% Identity: -
80% Identity: -