Rfun032114.2
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- -
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000019.1:5604153-5605613[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.019 2.3 10.6 5.6 1 23 151 173 151 173 0.98 2 11 0.029 3.5 10.0 2.2 1 23 182 204 182 204 0.98 3 11 0.0011 0.13 14.5 1.3 1 23 213 235 213 235 0.98 4 11 0.00057 0.068 15.4 0.8 1 23 244 266 244 266 0.98 5 11 0.65 78 5.7 2.9 1 23 275 297 275 297 0.97 6 11 0.016 1.9 10.8 0.3 2 23 307 328 306 328 0.95 7 11 0.72 87 5.6 5.8 1 23 335 358 335 358 0.97 8 11 0.0057 0.68 12.2 3.4 1 23 369 391 369 391 0.98 9 11 0.059 7 9.0 0.2 1 21 400 420 400 421 0.95 10 11 0.024 2.9 10.3 0.4 1 23 429 451 429 451 0.98 11 11 0.83 99 5.4 1.9 1 23 460 482 460 482 0.98
Sequence Information
- Coding Sequence
- ATGATTTGTACATCGTGTAGAGAAAATTTGGAATGCTATTTTGAGTTTGCTCAAAAGTGTTTGAGCACAGAggagaaaataaatacatattgcGATGACGAGAAAATTGATAGCATGAACCAGATAAAATTAAgcaatattatgtattattcattAAGAAACACTCTTAAACTGCCTGTTGAAGGTAGCCAAATACAAGGTATTAAACAAGAGATAGACATACATGAAAATGTATTAGACATTAAAGATGAAGGTTTCAATTCTGATGATACAAGAGCCCATTGTAATCCCATAGAGATGATGATGAGCGAagaagatgatatttttaaggAAGAATTCAAAAAAGAAGACGTAATGTTCTCAGATTCATTGGATACGTGTACTCAAACAAATCATGGTAACTTCAGTGTACGTAAGTCAGTCCGTAAAAGAGTTTCAAAGGCAGTTATGTACAAATGTACAGTGTGTCAGTATGAAACAAAACGGAAATATTGTTTTGATAGGCATCTTCTATCTCACAAAGATTTTTCTGAAGTGAAAACATATAAATGTGGAGAATGTAATCATCAGACGAAATATAAGAATAACATTGACAATCACATTCTGATGCATAGAGACACATCGGAAACAGAAATGTACAAGTGTGTAAAGTGTGCCtttgaaacaaaatacaaaagtaGTCTTAAGAACCACATGATAGTACACAATGACACTTCAAAAGcgaaatattttgaatgtaCAAAATGCTCGTATAAATCTATACGAAAGGGGAACTTCGAGGGTCACATACGAATCCACCAGCACACCTCCGAggtgaaaatatacaaatgcaCAAAGTGTCCTTACCAGGCTAAATATAGGCGCAGGTTCTCTTCTCACGAATTGACCCACGAGAAGGGTTCAGAAACGCAAATCTTAAAATGCGAGTTTTGTATTTATGCGACGATACGAAAAGGCAGCCTCAACCGTCATATGCTGCTTCACAAGCCCTCTACAGAAGTCCACAAATGCTCCGAGTGCACTTTCAAGACAAAATGGCAGGAGTCCCTGAAACGCCACAAGAAAAAGAACCACGTCCATAAGGACGCTGCTCAAGTGAAAATGTACCATTGTACGGAGTGTACTTACAAGACAGAATACCGAAGTGGTCTTAAGAGTCATATCCTGAAGCACAAGGACCCCTCAGAACTAAATATGTACAAGTGTGCGATGTGTCCATACGAGGCGAAACGGAAAGATAGCATCAGAACCCACCTGCtcaaaaataaatgtgtcaGAAAAATATACAAGTGTGCGATATGTACTTTTGAGACGGGCCGCAAGGCTTATATGAAACAGCACGTGATGATACATAGAGATCCGACACAAACCGAATTGTACAAGTGTGTTATGTGCACGTTTGTCTCGGAATTTGTGGGTCGTTTTAGGAAGCACATGTTTACCCACAATAATATGGTGTAA
- Protein Sequence
- MICTSCRENLECYFEFAQKCLSTEEKINTYCDDEKIDSMNQIKLSNIMYYSLRNTLKLPVEGSQIQGIKQEIDIHENVLDIKDEGFNSDDTRAHCNPIEMMMSEEDDIFKEEFKKEDVMFSDSLDTCTQTNHGNFSVRKSVRKRVSKAVMYKCTVCQYETKRKYCFDRHLLSHKDFSEVKTYKCGECNHQTKYKNNIDNHILMHRDTSETEMYKCVKCAFETKYKSSLKNHMIVHNDTSKAKYFECTKCSYKSIRKGNFEGHIRIHQHTSEVKIYKCTKCPYQAKYRRRFSSHELTHEKGSETQILKCEFCIYATIRKGSLNRHMLLHKPSTEVHKCSECTFKTKWQESLKRHKKKNHVHKDAAQVKMYHCTECTYKTEYRSGLKSHILKHKDPSELNMYKCAMCPYEAKRKDSIRTHLLKNKCVRKIYKCAICTFETGRKAYMKQHVMIHRDPTQTELYKCVMCTFVSEFVGRFRKHMFTHNNMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -