Rfun032129.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- -
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000019.1:5697915-5699267[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1 1.3e+02 5.1 0.5 10 23 89 102 87 102 0.89 2 12 0.04 4.8 9.6 2.0 1 23 111 133 111 133 0.98 3 12 0.016 1.9 10.9 4.4 1 23 142 164 142 164 0.95 4 12 0.0084 1 11.7 3.3 1 23 173 196 173 196 0.95 5 12 0.86 1e+02 5.4 4.9 1 23 205 228 205 228 0.97 6 12 0.22 26 7.2 4.7 1 23 237 260 237 260 0.94 7 12 0.48 58 6.2 5.7 1 19 269 287 269 291 0.95 8 12 0.00046 0.055 15.7 3.7 1 23 300 322 300 323 0.96 9 12 0.21 25 7.3 1.5 1 23 332 354 332 354 0.97 10 12 0.0044 0.53 12.6 2.8 1 23 363 385 363 385 0.98 11 12 2.2e-05 0.0026 19.8 0.5 1 23 394 416 394 416 0.98 12 12 0.00053 0.063 15.5 2.0 1 23 425 447 425 447 0.99
Sequence Information
- Coding Sequence
- atggACGTAGAAGAGAAAATCAGTATATATTGCAATTCTGAAAGTACTGACAATACGAGACGAGTAAATTTAAGCAgtatccattttttatttaacaaagatAACCCAGAGCTTTATAAGGAATCTATTGATCAAAGGGGGAGCCCCAATGCATCTCAAGTAGACACGTACAAGTGCACTAAGATAAGATATAAAGACAATCTAAAGCGTCTAGTAGTCATCCATAGAGATGTCTCTAAAGAGAAGACGTACAAATGTGAAGCTACAAAACAGAAATCGTCCCTAAGAAAACATTCGCGAGCTCACAAGGACCCATCGGAATTACGCATGTACAAGTGCGCGTCGTGTCGTTACGAGACAAAATATAAGGGCCATCTGATATACCACGTGGCGACCCACAGGGATATTTCGCGAGTGCCAGTGTACAGGTGCGACAAATGCACTTACGTGACAAAACGGAAATTCTGCCTCCAACAACATGCCGTCAGTCACAAAGACGATTCAGAAGTCGAAATGCACCAGTGCCCCACTTGTACCTACAAGACGCGATACAAGGGCAGCCTCAACTACCACATCCTACAAAAACACAAGGACTCTTCGGAAGTGACGATGTACAACTGTTCGAAATGTCGATACGAGACGAAACACAAGCCCCGCATGAAGATGCACATGTCGCGCAGCCACAAGGAGGCCCCGGAAGTGGAGATGCACAAGTGTCCGTCGTGCCAGTACGAGACCAAACATAAACAGAACATGAAACTGCACGTCCTGCTGAAACACAAGGACGCTTCGCAAGTGGAAATGTTCAAGTGCGAACAGTGTACGTTCATGACGAAGCGAAGGTGCAATTTCCAAAAGCACGACCTCAACCACAAGGACGCTACCCAAGTGGAGATGTACAAGTGCCCGATGTGTGACTACGAGACGAGATACAAGCGCAGCATGACCAACCACACTCGGGTGCACCACACGGATGCGCCCGAAATAAGGAGATTCAAGTGCACGCAGTGCACCTACGCCTCCAAATACAAGTACATTCTCGATCTGCACATGCTGTCGCACAAAAGCGTCTCAGAAGTCGAGATGCACAAATGCGCGATATGCAGCTTCGAAACCAAGTACAAGACGACTCTAAAGAAACACATTCTGGTCCACAAGGATGCCTCCGAGGTGCAGATGTTCGAATGTATGGTGTGCGACTTCGAGACGAAGCGGAAGAGCAACCTCACGGCCCACTTGATAACGCACAAGGACGCCGTGGAGACGGATATGTATAAATGCGCGATGTGTCCCTTCGAGACGAAATATAAGAACGCGTTGAAGCGCCATACGAAGACCCATAAAGCTGTTTGA
- Protein Sequence
- MDVEEKISIYCNSESTDNTRRVNLSSIHFLFNKDNPELYKESIDQRGSPNASQVDTYKCTKIRYKDNLKRLVVIHRDVSKEKTYKCEATKQKSSLRKHSRAHKDPSELRMYKCASCRYETKYKGHLIYHVATHRDISRVPVYRCDKCTYVTKRKFCLQQHAVSHKDDSEVEMHQCPTCTYKTRYKGSLNYHILQKHKDSSEVTMYNCSKCRYETKHKPRMKMHMSRSHKEAPEVEMHKCPSCQYETKHKQNMKLHVLLKHKDASQVEMFKCEQCTFMTKRRCNFQKHDLNHKDATQVEMYKCPMCDYETRYKRSMTNHTRVHHTDAPEIRRFKCTQCTYASKYKYILDLHMLSHKSVSEVEMHKCAICSFETKYKTTLKKHILVHKDASEVQMFECMVCDFETKRKSNLTAHLITHKDAVETDMYKCAMCPFETKYKNALKRHTKTHKAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -