Basic Information

Insect: Rosalia funebris
Gene Symbol: -
Assembly: GCA_037954035.1
Location: JAZFAV010000019.1:4408390-4410661[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00024 0.028 16.6 2.1 1 23 305 327 305 327 0.98

2 13 0.00024 0.029 16.5 1.5 1 23 336 358 336 358 0.99

3 13 0.0027 0.32 13.2 4.0 1 23 367 389 367 389 0.98

4 13 0.063 7.5 8.9 0.4 1 23 398 420 398 420 0.95

5 13 5.6e-05 0.0067 18.5 0.7 1 23 429 451 429 451 0.97

6 13 0.031 3.7 9.9 4.0 1 23 460 482 460 482 0.99

7 13 0.05 6 9.3 0.4 1 23 491 513 491 513 0.98

8 13 3.8 4.6e+02 3.3 5.4 1 23 522 544 522 544 0.98

9 13 0.15 17 7.8 2.9 1 23 553 575 553 575 0.98

10 13 0.001 0.12 14.6 1.4 1 23 584 606 584 606 0.98

11 13 0.045 5.4 9.4 1.4 1 23 609 631 609 631 0.98

12 13 0.11 13 8.2 7.2 1 23 640 663 640 663 0.98

13 13 0.0069 0.82 12.0 1.0 1 22 672 693 672 696 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00024	0.028	16.6	2.1	1	23	305	327	305	327	0.98
2	13	0.00024	0.029	16.5	1.5	1	23	336	358	336	358	0.99
3	13	0.0027	0.32	13.2	4.0	1	23	367	389	367	389	0.98
4	13	0.063	7.5	8.9	0.4	1	23	398	420	398	420	0.95
5	13	5.6e-05	0.0067	18.5	0.7	1	23	429	451	429	451	0.97
6	13	0.031	3.7	9.9	4.0	1	23	460	482	460	482	0.99
7	13	0.05	6	9.3	0.4	1	23	491	513	491	513	0.98
8	13	3.8	4.6e+02	3.3	5.4	1	23	522	544	522	544	0.98
9	13	0.15	17	7.8	2.9	1	23	553	575	553	575	0.98
10	13	0.001	0.12	14.6	1.4	1	23	584	606	584	606	0.98
11	13	0.045	5.4	9.4	1.4	1	23	609	631	609	631	0.98
12	13	0.11	13	8.2	7.2	1	23	640	663	640	663	0.98
13	13	0.0069	0.82	12.0	1.0	1	22	672	693	672	696	0.92

Sequence Information

Coding Sequence: ATGAAGGTGGACGAAAAACAAATTTGCAGACTGTGTTTAGACGTAGCCGATAATGAATTTAACGAAATAGAGGGAATTACCAAGGAAATGTTAGAAGTGCTCTTATTAGAAACGGATTGGAATATAATCGAAAATCCAATGATATGCAGGACCTGCATGGCAATTATCAAaagatcattttattttaaatccgCCTGCATTCATGCTCAAAAATTTGTAGTTTCTTTTGCTGTTGACAAAGAAGCTGAACTAGAATTGAAAGATATAGTTCATAGCGAACGAGGCACACAAATGGTGATTGAAGAGAATTTCAGGTGCCAATTCTGTATGAGTTGCGTAGAAGACAATGGtataaaaactaaactaaaagaaaatagtttagtTTTTATACACACTTTAATAGAGGAGACATTCTACAAGGAGATGTTATCGGTATTTATGCCAGAAATGGATTTCAGCAGTGTAAAGAATCCTGGAGTTTGTAGTCGTTGTAAAGAACATTTagaatgttattttatgttcatAAGGACCTTTTTGGagacagaaaataaattatatgcatATTGCCGACAAACAAGTAGTAACGGATCAAGAAGAATGAAATCAGGTGATGTATTACATTTTCTGCGTAATGGGAATATGACacaatcaaataaaatcaaatggaAATTAACATCTGACGAACTAGATGGGGTATATCCTTGCGAACTGatgaaaattgaagaaatattgGACATCAAAGATGATCAAGTGTCATTAAATGAGGAATTCGATATAGAAACTGATATGGCAGTAAATAAATCCCACCAAAGgaacacaataaataaaataatacacaaaagTACGCTATGTACAAATGTTACAACATACAGAAGGGCGTTAAAAGACAAGGATGGGtcagaagtaggcatgtatcaGTGTTCACATTGTCCTTACAAGAGCGCTGTGAAATCTTCCCTTAAGCGACATACCTTAGTTCATAAAGATGTCTCAGAAATAGAAATGTACAAGTGCGAATTGTGTACTTATGCGACGAAATACAAGTCCACTTTACTTCGACATGTATTGACTCACAAGGATGCTTCGGAAGTAGACATGCATAAGTGTTCGCTTTGTCCGTATAAGACCAAGGTAAGGGACAGCCTGCACAGACATATGTTAGTCCACAAGGATATTTCAGAAGTGAAAATGTACAAGTGTGAACTATGTAGTTATGCAACAAAGTACAAAAGCACATTACCACAACACGCATTGATTCACAAGAGTGCTTCAGAAGTAGATATGTATAACTGCTTGATTTGTCCGCATAAGACCAAAAGAAAGAGCGATCTCGAAGCTCACATGATAATCCATAAGGATGTCTCGGAAGTTGACATGTATAAGTGCTTGCATTGCCCGTATGAGACCAAGATAAGGCGCCTTCTGCACAAACATATGTTAGTCCACAAGGACATTTCAGAAGTGGAAATGTACAAATGTGGATTATgtatttatgcgacaaagtatAAAGGCGCATTACAGCAACACACTTTGACTCATAAGGATGCTTCGGAAATAAGCATGCATAAGTGCTCGCTTTGTCCCTATGAGACCAAATGGAAGCGCTGTTTTAAAAATCACATTATAACCCATAAGGATGCCTCCGAAATCGACATGTATAAGTGCTCGCGTTGCCCCTATGAGACCAAGTTAAGAAACCGCCTACACCAACATATGTTAGTCCACAAGGACATTTCAGAATTGAAAACGTACAAATGTGAACTATGTACTTATGCGACAAAGTATAAAAAATCGTTACGGGCACACGCGTCGACTCACAAGACATTCAAGTGCGGATCGTGTACGTTCGCGACGAAATACAAACGTAGTTTGGAGCTGCACTTGCTGAGCCACAAGGACGCGTCGGAGTTGGAAATTTACAAGTGTTCGGTATGTAGTTTTCAAACTAAGCATAAGCACTACGTCAAACAGCACATGTTGACACAGCACAACGGGGCGTCAAAATTGGAGATGTATAAGTGTGCAGTGTGTGCGTTTgagacaaaatataaaagtaacctGATAAAGCATGTGCGCAACCGCTCCCATAGAGTGCCTCAGAAGTAA
Protein Sequence: MKVDEKQICRLCLDVADNEFNEIEGITKEMLEVLLLETDWNIIENPMICRTCMAIIKRSFYFKSACIHAQKFVVSFAVDKEAELELKDIVHSERGTQMVIEENFRCQFCMSCVEDNGIKTKLKENSLVFIHTLIEETFYKEMLSVFMPEMDFSSVKNPGVCSRCKEHLECYFMFIRTFLETENKLYAYCRQTSSNGSRRMKSGDVLHFLRNGNMTQSNKIKWKLTSDELDGVYPCELMKIEEILDIKDDQVSLNEEFDIETDMAVNKSHQRNTINKIIHKSTLCTNVTTYRRALKDKDGSEVGMYQCSHCPYKSAVKSSLKRHTLVHKDVSEIEMYKCELCTYATKYKSTLLRHVLTHKDASEVDMHKCSLCPYKTKVRDSLHRHMLVHKDISEVKMYKCELCSYATKYKSTLPQHALIHKSASEVDMYNCLICPHKTKRKSDLEAHMIIHKDVSEVDMYKCLHCPYETKIRRLLHKHMLVHKDISEVEMYKCGLCIYATKYKGALQQHTLTHKDASEISMHKCSLCPYETKWKRCFKNHIITHKDASEIDMYKCSRCPYETKLRNRLHQHMLVHKDISELKTYKCELCTYATKYKKSLRAHASTHKTFKCGSCTFATKYKRSLELHLLSHKDASELEIYKCSVCSFQTKHKHYVKQHMLTQHNGASKLEMYKCAVCAFETKYKSNLIKHVRNRSHRVPQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01310977;
90% Identity: iTF_01310977;
80% Identity: -