Basic Information

Insect: Rosalia funebris
Gene Symbol: -
Assembly: GCA_037954035.1
Location: JAZFAV010000019.1:4875905-4878221[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00085 0.1 14.8 0.3 1 23 270 292 270 292 0.98

2 12 6.8 8.2e+02 2.5 3.7 1 23 301 323 301 323 0.96

3 12 0.52 63 6.0 3.0 2 23 333 355 332 355 0.96

4 12 3.6 4.3e+02 3.4 2.0 2 23 361 382 360 382 0.94

5 12 0.0003 0.036 16.3 0.7 1 23 391 413 391 413 0.97

6 12 0.0045 0.54 12.5 0.9 1 23 422 444 422 444 0.99

7 12 0.00024 0.029 16.5 5.4 1 23 451 473 451 473 0.97

8 12 0.00031 0.037 16.2 1.2 1 23 482 504 482 504 0.94

9 12 0.01 1.2 11.5 1.1 1 23 513 535 513 535 0.98

10 12 0.017 2 10.7 2.9 3 23 546 566 545 566 0.97

11 12 0.0014 0.17 14.1 4.0 1 23 575 597 575 597 0.99

12 12 0.059 7.1 9.0 0.6 1 23 606 628 606 628 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00085	0.1	14.8	0.3	1	23	270	292	270	292	0.98
2	12	6.8	8.2e+02	2.5	3.7	1	23	301	323	301	323	0.96
3	12	0.52	63	6.0	3.0	2	23	333	355	332	355	0.96
4	12	3.6	4.3e+02	3.4	2.0	2	23	361	382	360	382	0.94
5	12	0.0003	0.036	16.3	0.7	1	23	391	413	391	413	0.97
6	12	0.0045	0.54	12.5	0.9	1	23	422	444	422	444	0.99
7	12	0.00024	0.029	16.5	5.4	1	23	451	473	451	473	0.97
8	12	0.00031	0.037	16.2	1.2	1	23	482	504	482	504	0.94
9	12	0.01	1.2	11.5	1.1	1	23	513	535	513	535	0.98
10	12	0.017	2	10.7	2.9	3	23	546	566	545	566	0.97
11	12	0.0014	0.17	14.1	4.0	1	23	575	597	575	597	0.99
12	12	0.059	7.1	9.0	0.6	1	23	606	628	606	628	0.97

Sequence Information

Coding Sequence: ATGGAAGTTAGCGATAGAGGCAAAACCTGCAGGCTTTGCCTGAATGCTCCTAACAACGGTTTTGAAATTTTAGACGAAATTATCGAGACTAACTTGAATTCTCTTCTATTATATCCAGATCTGCATATATCTGAAGAGCCAATAATATGTAAAACCTGCATAGAAAATCTGGAATGTTGTCTAAACTTTAAAGCGAAGTGTATGCTAATCGAAGATCGTATAAGTAACTGTAATAAGGACACTGAAAAACTTGATTTACGACAGGTTGTTCAAAGCGAAATTGTAAACAAAGGTGATTCCAGTGACTGTAACTTATGCCGTTTCTGTTTGGAAGCAATTCAGTATTCTATTGACTgtgatgtatttttaaagtttgatGATGTTGAGATGTTGAAGGAACACTTCCCAGAGTTGGATCTCAACATCACTGACCGACCTAGTGCATGTGCGTCGTGTTATGACTGTTTACAACGTcaatttgattttataaataactgtGTGCAAATTGACGAGAAAATAATGGAATTCTGTAACGCTGAAGGCACAAACAGTAGAGGCCATGTGGATTTGAATGATGTAGCGAATTTTGACTCgagaaatatattgaaaaaagacGATGGTCCACATATAGTCAAAACAGTGATCGGTATAAAGACGGAAGAAAATTCAGATGATATTGAAATAGGAATGAACAAACTTGTGGCAATAAAGCAAGAGATTGTTTCCCAAGAAGGTTCAAAGAACCAAAAAATTGGGCTGGTTAAAAATGAAAGCCCCGAAAAAAATCTTCCCCCAGTGGACCGCCCCTACAAATGCGAATTATGCGACTTCTCGGGCCGGAGACCGTCCAGCATCACCCAGCACATGGTGTCGCACAAAAGCATGTCTGAAGTGAAGACGTACACGTGCGAGCTGTGTTCGTTCCAGACGAAATACAAGACCTGCATAAGCAGGCACGTCCTGTTGCACAAGGGCTCCGACGAGGTGGAGATCCTCAAGTGCGACCTCTGCACGTACCAGACCAAGATCAAGGCGTACCTGCACAGACACACGATGTCGTTCCACAAAGCTGAGCTGCTCAGGTGCACAGAGTGCATTTTCGAGACGAGGAACAAGCGGACGTTCCGGAAACACAGCCTGATACACAACAAGACGGAGGGCGCGTCCATGTACGAGTGCCCCCAATGCAACTACAAGGCCACGTTCAAGAGCACCCTCTCGAAGCACATGGTAGTGCACGCGAACAGCCACAAAGTGACCAAGTTCAAGTGCACGGAATGCGAGTTCGAGGCGGAGACGCGGAACCACCTGGCGGCCCACGTGAAGACCCACGTGCGCGGCGACAAGGCGCACAAGTGCCCCGAATGCGAATTCTCCACGAGACGCAAGCAGAACCTCCGCCACCACATGGTGCGCCACGAGGAAAACCCCCAAGTGCGGACGTATAAGTGTCCagactgcaattttgagacCCGGCATAAGGGGAACCTGGCAAAGCACTCGGTCGTCCACAAGAGCCTGTCCGAGGTGCGCCTCTACAGCTGCGAGGTGTGCCCCTTCCAGACGAAGCGGCAGAACAGCATGCGGGTGCACACCCTGCGGCACAAGACCACAGCGGAGGTGCAGATCAACCACTGCGAGCTGTGCAGCTACCAGACGAAACGGAAGGATGTGCTACGGCAACACATGAAGGTTCACATGAGCATCGAGGAGACGGTGTCGTACAAGTGCGAGTTCTGCGACTACCAGACGAAGAGGAAGGGGCACATACAGTCGCACATGCTGCGGCACAAGGATATGTCGGAGATGGAGACATTCAAGTGTGCGGTGTGCGACTTCCAGACGAAGTACAAGGGGAGCATTCAGAAGCACGCTAGCATTCACGAGAGGGAGGCCAAGGAGTCTGTTAATGGGAGAGGGGACAGGACAAGGAAACAATCGGACGgaaatgtgtaa
Protein Sequence: MEVSDRGKTCRLCLNAPNNGFEILDEIIETNLNSLLLYPDLHISEEPIICKTCIENLECCLNFKAKCMLIEDRISNCNKDTEKLDLRQVVQSEIVNKGDSSDCNLCRFCLEAIQYSIDCDVFLKFDDVEMLKEHFPELDLNITDRPSACASCYDCLQRQFDFINNCVQIDEKIMEFCNAEGTNSRGHVDLNDVANFDSRNILKKDDGPHIVKTVIGIKTEENSDDIEIGMNKLVAIKQEIVSQEGSKNQKIGLVKNESPEKNLPPVDRPYKCELCDFSGRRPSSITQHMVSHKSMSEVKTYTCELCSFQTKYKTCISRHVLLHKGSDEVEILKCDLCTYQTKIKAYLHRHTMSFHKAELLRCTECIFETRNKRTFRKHSLIHNKTEGASMYECPQCNYKATFKSTLSKHMVVHANSHKVTKFKCTECEFEAETRNHLAAHVKTHVRGDKAHKCPECEFSTRRKQNLRHHMVRHEENPQVRTYKCPDCNFETRHKGNLAKHSVVHKSLSEVRLYSCEVCPFQTKRQNSMRVHTLRHKTTAEVQINHCELCSYQTKRKDVLRQHMKVHMSIEETVSYKCEFCDYQTKRKGHIQSHMLRHKDMSEMETFKCAVCDFQTKYKGSIQKHASIHEREAKESVNGRGDRTRKQSDGNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -