Basic Information

Insect: Rosalia funebris
Gene Symbol: -
Assembly: GCA_037954035.1
Location: JAZFAV010000019.1:4522421-4524607[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00097 0.12 14.7 1.9 1 23 290 312 290 312 0.96

2 12 0.0014 0.16 14.2 0.6 1 23 321 343 321 343 0.97

3 12 0.01 1.2 11.5 2.4 1 23 352 374 352 374 0.98

4 12 3 3.6e+02 3.6 6.2 1 23 383 405 383 405 0.98

5 12 0.0012 0.14 14.4 1.4 1 23 414 436 414 436 0.99

6 12 0.035 4.2 9.8 1.9 1 23 445 467 445 467 0.97

7 12 0.14 16 7.9 1.5 1 23 476 498 476 498 0.97

8 12 0.19 22 7.5 5.7 1 23 507 529 507 529 0.98

9 12 2.7e-05 0.0032 19.5 2.4 1 23 538 560 538 560 0.99

10 12 0.00028 0.034 16.3 3.1 1 23 569 591 569 591 0.98

11 12 0.12 15 8.0 4.9 1 23 602 624 602 624 0.98

12 12 0.0046 0.55 12.5 6.2 1 23 633 655 633 655 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00097	0.12	14.7	1.9	1	23	290	312	290	312	0.96
2	12	0.0014	0.16	14.2	0.6	1	23	321	343	321	343	0.97
3	12	0.01	1.2	11.5	2.4	1	23	352	374	352	374	0.98
4	12	3	3.6e+02	3.6	6.2	1	23	383	405	383	405	0.98
5	12	0.0012	0.14	14.4	1.4	1	23	414	436	414	436	0.99
6	12	0.035	4.2	9.8	1.9	1	23	445	467	445	467	0.97
7	12	0.14	16	7.9	1.5	1	23	476	498	476	498	0.97
8	12	0.19	22	7.5	5.7	1	23	507	529	507	529	0.98
9	12	2.7e-05	0.0032	19.5	2.4	1	23	538	560	538	560	0.99
10	12	0.00028	0.034	16.3	3.1	1	23	569	591	569	591	0.98
11	12	0.12	15	8.0	4.9	1	23	602	624	602	624	0.98
12	12	0.0046	0.55	12.5	6.2	1	23	633	655	633	655	0.98

Sequence Information

Coding Sequence: ATGGACGGAAAACAAATTTGCAGACTGTGTTTAAACgtgaatgaaaatgaaattgatGAAATCGATGAAGTAATGAGGGGAATGCTAGAAGTACTCTTATTAGAAACgGATTTCAGTATAATTGAGAATCTTACAATATGCAGGACGTGTACAGGGATTATCAAAcgatcattttattttaaatcggcCTGTATCTGCACTGAGAAACATGTAGTTTCTTTTGTTGTTAACAAAAAAGTGACTGAATTTGAATTTATGGATATGGATCATGACAAGGGATGCGTAGAAATGGTAGTTGAAGAAAGTTTCATGTGTCGATTCTGTATGAATAGGATAAACAAGAATAATTTTGTGcctgtagatattttaatggaGGAATCAATGTACAAGGAGATGTTACCAGTATTTATGCCAGAAATGGATTTCACCATAGTCAAGGCTCCGATAGTTTGTAAGCCTTGTAGAGAAAATTTACAATGTTATTTCTTATTCATAAAGAACTGTTTGGGCATAGAAAACGAACTATATCAGTATTGCCAATATGGAGTTGATGGTAACTCGAGACAGTTCGATAAATATCCCATCAAAAGGGAATTAACATCTAAAGAGCTATTATACTCTTGTGATTTTATGaacattaaagaaatattggaCGCCAATGAAAGGGTGTGGTTAAACGATGAGCCTCGTGAACATCTTTCAGAGATAGCGTCAGACAATGACAGGTATCCCTATGGGCAAAATAAACTTGCGCAATCTAATATACCTTCAGATATGGATAAGTACAGTCAAAACATGTCTACTAGTGAAACAGAACAGATCCAATATCACGACAGGCATGAGACccccaaaaataattcagacacATGCAAATGTCCCATTTGCCCCTACACGACGAAGTCAATGACGTATGTTAAAAGGCATATGTTGGTCCACAAAGATGcctctgaaataaaaatgtacaaatgtgATTTGTGCCCGTACGTGACAAGATACAAGAACACCTTACGACAGCACGGATTAGTCCACAAAGATGCTTCTGAGATTGACATGTACAAGTGTGAATATTGCGACTACAAGACAAAGTGGAAGCGCTATCTTAAAAGTCATATAACAGTTCACAGGGATATCACGGAAGTAGATATGTACAAGTGTTCCTGTTGCTCGTACCAGACCAAGCTAAAGGCGTACCTTCATAGACATATGCTTGTCCATAAGGATGCATCAGAAgtagaaatgtataaatgtgAATTTTGTGCTTATGCAACAAAGTACAAGAGCACGCTACAACAGCATGTGTTAACTCACAAGGATGCGTCTGAAGTAGACATTTACAAATGTCCGCACTGTCAGTATGAGACCAAGTGGAAGCGCTACCTTAAAGACCACATCGTCGTGCACAAGGACGCCCccgatataaaaatatacaaatgcgAATCGTGCATTTATACGACAAAATCCAAACGTACCCTAAAACAACACGCGCTGATCCACAAGATGGCGTCCGAAATCGAAATGTATAAATGCACGCTATGCCCGTACGAGACCAAGTGGAAGAACCACCTCAAGAGGCACCATATACGTCACAAGGATGCCTCGGAGCTGGAGATGTACAGATGCCTGATATGCGACACCCAATTTAAGCGTAAGCAGTATATCCAGCGCCACATGTTGACCCACATGGACGCCTCCGAGCTGGAAACGTACAAATGCAAGGTCTGCAACTTCCAGACCAAATATCAGAACAACCTGACGCGGCATTTGCTTTCTCACTCTAACAGCATCGTTCCTAAAAGTAAAACGTACGACTGCCCGACGTGCAGCTTCCAAACGAGGCACAAGCATTACGTGAAAGAGCACATGTTAATGCATAAGGAGGCTACGGAATTGGACATGTATAAGTGTACTCTCTGTACGTTCGAGACGAAATATAAACGTAACTTAAATAAGCACATGCATTCCCACGCTCAAAACACCGCTTCAAAAGCAGAAAGTAACGTGTGA
Protein Sequence: MDGKQICRLCLNVNENEIDEIDEVMRGMLEVLLLETDFSIIENLTICRTCTGIIKRSFYFKSACICTEKHVVSFVVNKKVTEFEFMDMDHDKGCVEMVVEESFMCRFCMNRINKNNFVPVDILMEESMYKEMLPVFMPEMDFTIVKAPIVCKPCRENLQCYFLFIKNCLGIENELYQYCQYGVDGNSRQFDKYPIKRELTSKELLYSCDFMNIKEILDANERVWLNDEPREHLSEIASDNDRYPYGQNKLAQSNIPSDMDKYSQNMSTSETEQIQYHDRHETPKNNSDTCKCPICPYTTKSMTYVKRHMLVHKDASEIKMYKCDLCPYVTRYKNTLRQHGLVHKDASEIDMYKCEYCDYKTKWKRYLKSHITVHRDITEVDMYKCSCCSYQTKLKAYLHRHMLVHKDASEVEMYKCEFCAYATKYKSTLQQHVLTHKDASEVDIYKCPHCQYETKWKRYLKDHIVVHKDAPDIKIYKCESCIYTTKSKRTLKQHALIHKMASEIEMYKCTLCPYETKWKNHLKRHHIRHKDASELEMYRCLICDTQFKRKQYIQRHMLTHMDASELETYKCKVCNFQTKYQNNLTRHLLSHSNSIVPKSKTYDCPTCSFQTRHKHYVKEHMLMHKEATELDMYKCTLCTFETKYKRNLNKHMHSHAQNTASKAESNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -