Rfun031917.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- -
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000019.1:4588776-4591382[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.34 41 6.6 0.1 1 17 297 313 297 318 0.95 2 14 0.63 76 5.8 2.0 1 23 325 347 325 347 0.98 3 14 5.8 7e+02 2.8 1.4 1 23 354 376 354 376 0.76 4 14 0.00012 0.014 17.5 0.5 1 23 385 407 385 407 0.98 5 14 0.69 83 5.7 3.3 1 23 416 438 416 438 0.96 6 14 7.6e-05 0.0091 18.1 0.4 1 23 447 469 447 469 0.98 7 14 0.35 42 6.6 2.4 1 23 478 500 478 500 0.97 8 14 0.0006 0.072 15.3 2.5 1 23 509 531 509 531 0.98 9 14 0.0035 0.42 12.9 1.7 1 23 540 562 540 562 0.98 10 14 0.0012 0.14 14.4 3.8 1 23 571 593 571 593 0.98 11 14 0.0007 0.084 15.1 0.2 1 23 602 624 602 624 0.98 12 14 0.0063 0.75 12.1 1.2 1 23 633 655 633 655 0.98 13 14 0.00024 0.029 16.6 2.4 1 23 664 686 664 686 0.95 14 14 0.035 4.2 9.7 1.2 1 23 697 719 697 719 0.98
Sequence Information
- Coding Sequence
- ATGGTGGAAGAAAAACAGATTTGTAGACTATGTCTTAAAGTAGTGGGTAGCGAATTTGacgaaataaatgatataatagGTGACATGCTGGAAGTGCTTTTATTAGACAGGAATTGGAACATCAGTAAAAATCGTACAATATGCGAGACCTGTACTGCCATTATCAAAAGATCGTTTAATTTCAAATCGGTCTGCATTCACACTGAGAAACTTGTAGCTTCTTTTGCTGTTAACAAAAAAGAGACTACATTTGAATTGGAGACCATAGTACATAAGAAGGGAGGCACAGAAATTGTTGTTGAGGAAAATTTCAGGTGTCGATTCTGTATGAATcgcataatgaaaaataatttgttctccATCAAAATTTTGATGGAAGACACATTATACAAGATGTTGCCAGAATTTATGCCAGAAATAgaCTTCAGCGTAGTCAACATTCCCATGATTTGCACCCCTTGCAAAGAAAATCTAGAATGTTATTTCATGTTCGTAAGGAACCTTTTGGATATAGAAAATAAGATACACCCGTCTTACCAAAATGGAGGATCAAACCAAATGAATTCGGCtgatatattacattttcaatttaatggaACTTTTACACATCCTAACAAGGGAAAAGTAACCATATCTGAAGAACCAGAGAAGGTATGCTCTTTGGAATTAATGAAGACTGAAGAAATATTGGACATTAAGGATGAAGAAGTGTTGCTCAAAGAGGATCCTTGTGAAAGTCTTTCAGAAATAGTATCGGATGAAGATGCGATATATAAATCTGACCACaggattgaaataaataaaataaaacacaaaagtaCAGTCGAAGCTTATACTACCCAATACAAACGTAATTCAGCTCATAAGGGCACGTCAGAAATGGCAACATACAAATGTGGAATGTGTccttttgcaacaaaatataaaaataacttaaaacaaCCCATGTTAATTCATGATGTAGTACAAATGTACAAATGCAAGTTGTGTATTTATGTGACTCAATACAAGCGTAGCTTAGACAAACATATGTTTATTCACAAAAACGAATCCGGCATGTACAAATGTTCACATTGTTCATACGAGACTAAGTGGAAGGGCCGCATTAACAAGCATGCGATAATCCACCAGGATGTATCTGAAGTACAAATGTATGAGTGCAAATTATGTCCTTATGCGACGAAACGCAAGCGTGCCTTAAAACAACACTTGCTGATCCACAAGGATCCTTCCGAagtgaaaatgtataaatgcCCACATTGTCCGTATGAGAGTAAATGGAAGTGTGGACTTACAACGCATAGCATAACCCACATGGATGTATCTGAAGTACAAATGTATCAATGCGAATTATGTCCTTACACGACGAGAGACAAACGTGCCTTAAAACAACACTTGCTGATCCACAAGGATCCTTCGGAagtgaaaatgtataaatgcCCACTTTGTCCGTATGAGAGTAAATGGAAGTGTAAACTTACAAGGCATAGCATAACCCACAAGGATGTATCTGAAGTACAAATGTACGAATGTGAATTATGTCCTCACACGACGAGATACAAACGTACCTTAAAACGACACTTGCTGATCCACAAAGATCCTTCCGaagtgaaaatatataaatgccCACTTTGTCCATATGAGAGTAAACAGAAGTGTGCACTTACAACCCATAGCATTACCCACAAGAATGTCTCTGAAGTACAACTGTATGAATGTAAATTATGTCCTTACACGACAAGATACAAATGTACCTTAAAACGACACTTGCTGATCCACAAGGATCCTTCCAAagtgaaaatgtataaatgcCCACTTTGTCCGTATGAGAGTAAAGTAAAGGGTGAACTTACAAGGCATAGCATAACCCACAAGGATGCATCTGAGGTACAAATGTATGAGTGCGAATTATGTCCTTTCGAGACGAGACATAAAAGTTCCATAAAACAACACTTGCTGATCCATAAGGATCCTTCCGAagtgaaaatgtataaatgtccACTTTGTCCATATGAGTGTAAACGGAAGGGTCAACTTACAAAGCATAGCATAAACCACAAGGACGCGTATTGTTCAGAactgaaaatgtataaatgtccAGCCTGTAACTTGCAAAcgaaaaatggaaataacttaTCGAAACATACGTTTACTCACCGAGATGATGGCGGTTCTGAGATAGCAATTTATGAGTGTAGTGACATCACGTAG
- Protein Sequence
- MVEEKQICRLCLKVVGSEFDEINDIIGDMLEVLLLDRNWNISKNRTICETCTAIIKRSFNFKSVCIHTEKLVASFAVNKKETTFELETIVHKKGGTEIVVEENFRCRFCMNRIMKNNLFSIKILMEDTLYKMLPEFMPEIDFSVVNIPMICTPCKENLECYFMFVRNLLDIENKIHPSYQNGGSNQMNSADILHFQFNGTFTHPNKGKVTISEEPEKVCSLELMKTEEILDIKDEEVLLKEDPCESLSEIVSDEDAIYKSDHRIEINKIKHKSTVEAYTTQYKRNSAHKGTSEMATYKCGMCPFATKYKNNLKQPMLIHDVVQMYKCKLCIYVTQYKRSLDKHMFIHKNESGMYKCSHCSYETKWKGRINKHAIIHQDVSEVQMYECKLCPYATKRKRALKQHLLIHKDPSEVKMYKCPHCPYESKWKCGLTTHSITHMDVSEVQMYQCELCPYTTRDKRALKQHLLIHKDPSEVKMYKCPLCPYESKWKCKLTRHSITHKDVSEVQMYECELCPHTTRYKRTLKRHLLIHKDPSEVKIYKCPLCPYESKQKCALTTHSITHKNVSEVQLYECKLCPYTTRYKCTLKRHLLIHKDPSKVKMYKCPLCPYESKVKGELTRHSITHKDASEVQMYECELCPFETRHKSSIKQHLLIHKDPSEVKMYKCPLCPYECKRKGQLTKHSINHKDAYCSELKMYKCPACNLQTKNGNNLSKHTFTHRDDGGSEIAIYECSDIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -