Basic Information

Insect: Rosalia funebris
Gene Symbol: -
Assembly: GCA_037954035.1
Location: JAZFAV010000019.1:507892-510622[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.23 27 7.2 1.9 1 23 300 322 300 322 0.98

2 13 0.0055 0.66 12.3 3.8 1 23 331 353 331 353 0.98

3 13 0.0032 0.38 13.0 2.0 1 23 362 384 362 384 0.97

4 13 0.0058 0.69 12.2 1.1 1 23 396 418 396 418 0.98

5 13 0.00045 0.054 15.7 2.1 1 23 427 449 427 449 0.99

6 13 0.00035 0.041 16.1 2.1 1 23 458 480 458 480 0.99

7 13 0.24 29 7.1 1.2 1 23 489 511 489 511 0.99

8 13 0.013 1.5 11.1 4.5 1 23 520 542 520 542 0.98

9 13 0.0023 0.28 13.4 3.7 1 23 551 573 551 573 0.98

10 13 0.0002 0.024 16.8 0.7 1 23 582 604 582 604 0.99

11 13 0.052 6.3 9.2 3.5 1 23 613 635 613 635 0.98

12 13 0.00034 0.041 16.1 3.1 1 23 644 666 644 666 0.99

13 13 0.0063 0.76 12.1 3.5 1 23 675 697 675 697 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.23	27	7.2	1.9	1	23	300	322	300	322	0.98
2	13	0.0055	0.66	12.3	3.8	1	23	331	353	331	353	0.98
3	13	0.0032	0.38	13.0	2.0	1	23	362	384	362	384	0.97
4	13	0.0058	0.69	12.2	1.1	1	23	396	418	396	418	0.98
5	13	0.00045	0.054	15.7	2.1	1	23	427	449	427	449	0.99
6	13	0.00035	0.041	16.1	2.1	1	23	458	480	458	480	0.99
7	13	0.24	29	7.1	1.2	1	23	489	511	489	511	0.99
8	13	0.013	1.5	11.1	4.5	1	23	520	542	520	542	0.98
9	13	0.0023	0.28	13.4	3.7	1	23	551	573	551	573	0.98
10	13	0.0002	0.024	16.8	0.7	1	23	582	604	582	604	0.99
11	13	0.052	6.3	9.2	3.5	1	23	613	635	613	635	0.98
12	13	0.00034	0.041	16.1	3.1	1	23	644	666	644	666	0.99
13	13	0.0063	0.76	12.1	3.5	1	23	675	697	675	697	0.98

Sequence Information

Coding Sequence: aTGGATATAAAAGAGAAACAAATTTGTAGACTCTGTTCAGATATAACGCAGGACTCATTTGAGATAATAGATGAAGTTTTAACAGAGATATTCGACGTTCTACTGTTAAAGATGAATTTGAACATAAGCGAACGCCCAATTATATGTCGCCAATGTGCAAATCTTATAAAGAAGATATTTCATTTCAAAGCTACCTATCTCTATGTCGAAAGAAATTTACTTTCTCCTGTCTTTAATAATCCAGAAGATACGtttgaattaaaaaacatatacaaagTTAGTCAAGTTATAGAGACTGTCGTCGATAAAAATTTCACGATTTGTCGATTCTGTGCGGGGCAACAGGACAGAAGTAATTTTATGCCAATGGATATCCTTATGAATGATGCAGTGTTTGCGGAGATGTTTGGGGTCCTTATGCCAGAGATGGATCTCAATATTGCAAGGAACCCCGTCATCTGTACTGCCTGTAGAGGGAATTTGGAATGTTATTTCAAGTTCGTACTGGACTGTTTGACTGTAGAAAAAAGAATAAacgaatattgtaaaattgatGGCATCAAAGACATcagtaaagtaaaattataCAATGTACTGCATTTCCTGCATAAAGATGTTGGAAGGAGCCCCAACGAATGTTCTCAAATAGCTGTGATCAAACAAGAAAACCTGCTTGAGGAGATAGAAAATGCATACCATGAAGTAGATAATTTACTGCCCATTGAATGTACACAAAGACCTGTTATTAAGCAAGAGATGAAAATGTTCAATGTGACTGAAAATGAAGTAATAAATACAGAAGTTTTGGAAATCAAAGGTGAGGGCGTCATTGTGAATGAAAAATGTTCCGAGAGCCCATCTGATGTAATATTATCCAAAAAAGtaatatacaacaaatataaGTGCAATCAGTGTATTTATGAgacaaataataagaaaaaactaaAGGGTCATGCTAGGAGTCATATGAACATTCCACAAACACAAACGTACCATTGTTCACAATGTACATACGTAGCCAGTAATATGAGCCATCTTGTAAAGCATATGTCGAGCCACAAGAATACTGCAGAAGTAAAAATGCACAAATGCACGATATGCAGTTACGAAACAAAATACAAGATAAGCCTTAACAATCATATGGTGGTCCACAGCGATGCCTTGAAGGTAAAAGAATTCCACAAGTACCCTTGCGTGATGTGCACCTTCGAGACTAAGTATAAGAAGTCTCTTTATGAACACATGCGTGTTCACACAAGACCTTCAGACATCGACCATTTCAAGTGCACGATATGCGCCTACGAGACAAAATACAAGACGTCTCTCAAGTCTCACATGCTAACGCACAAAGACTCCTTCGAGATAAAAAAGTACAAGTGCTTACAGTGCGCTCATAGAACAGAACGTAAAAGCAACCTCATGGCGCATATGCTAACCCACAAAGGAGGTTCCGAATCGCTATTATACAAATGCATGCAATGCGCTTATGCAGCGAAACATATAAACAGCCTGAAATTACATCTGCTAACCCACAAGGACGCTTCAGAAGTAGAATTGTACAAGTGTACTACGTGTGATTtcgaaacaaagtataaaaagTGTCTCCAGAGCCATATGGTAATCCACAAGGACCCTTCGGAACTTAAAATGCACAAGTGCACGATCTGTACGTTCGCGACGAAATACAAGAACAACCTTACGAATCATTTGCTAAGCCACACAAACAGGTCAGATATGAGGAGGTACGAGTGCACCATATGCGTTTACGGGACAAACCGAAAGCTGAACCTTAAAAACCACATGCTGACGCACAGTAGCGACTCGACAGACGATACTTATAAGTGTGCCACATGCGATTATCGATCTAACAAAAGATCCTGTATTAGAAGGCACCTGTTGGTTCACAAGGACCTGTCGCACACCGAACCCTATAAGTGTTCGTCATGTACCTTTGAGACTAAACGGAAGAGCTACCTCACAAAGCACATGTTAGTCCATAAGGATAGTTCAGAAGTAAAGTTATACCAATGCACGTCTTGTACGTACAAGACGAAATATAAACAAAGTCTTAATAGGCATATTTTCGTTCACAAAAAGGCTGCAGAGAAAAAGAGTGAACAACAAATTGAAGGTGACATATAA
Protein Sequence: MDIKEKQICRLCSDITQDSFEIIDEVLTEIFDVLLLKMNLNISERPIICRQCANLIKKIFHFKATYLYVERNLLSPVFNNPEDTFELKNIYKVSQVIETVVDKNFTICRFCAGQQDRSNFMPMDILMNDAVFAEMFGVLMPEMDLNIARNPVICTACRGNLECYFKFVLDCLTVEKRINEYCKIDGIKDISKVKLYNVLHFLHKDVGRSPNECSQIAVIKQENLLEEIENAYHEVDNLLPIECTQRPVIKQEMKMFNVTENEVINTEVLEIKGEGVIVNEKCSESPSDVILSKKVIYNKYKCNQCIYETNNKKKLKGHARSHMNIPQTQTYHCSQCTYVASNMSHLVKHMSSHKNTAEVKMHKCTICSYETKYKISLNNHMVVHSDALKVKEFHKYPCVMCTFETKYKKSLYEHMRVHTRPSDIDHFKCTICAYETKYKTSLKSHMLTHKDSFEIKKYKCLQCAHRTERKSNLMAHMLTHKGGSESLLYKCMQCAYAAKHINSLKLHLLTHKDASEVELYKCTTCDFETKYKKCLQSHMVIHKDPSELKMHKCTICTFATKYKNNLTNHLLSHTNRSDMRRYECTICVYGTNRKLNLKNHMLTHSSDSTDDTYKCATCDYRSNKRSCIRRHLLVHKDLSHTEPYKCSSCTFETKRKSYLTKHMLVHKDSSEVKLYQCTSCTYKTKYKQSLNRHIFVHKKAAEKKSEQQIEGDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01310865;
90% Identity: iTF_01310865;
80% Identity: iTF_01310865;