Rfun031986.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rosalia funebris
Gene Symbol
-
Assembly
GCA_037954035.1
Location
JAZFAV010000019.1:4868621-4870579[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.98 1.2e+02 5.2 0.2 13 23 183 193 181 193 0.88
2 13 0.069 8.3 8.8 2.1 1 23 202 224 202 224 0.94
3 13 4.9e-05 0.0058 18.7 3.5 1 23 233 255 233 255 0.99
4 13 7.8e-05 0.0094 18.1 4.3 1 23 264 286 264 286 0.99
5 13 4.9e-05 0.0058 18.7 3.5 1 23 295 317 295 317 0.99
6 13 0.0059 0.7 12.2 2.2 6 23 331 348 329 348 0.96
7 13 0.0035 0.42 12.9 4.0 1 23 357 379 357 379 0.99
8 13 1e-05 0.0012 20.8 1.6 1 23 388 410 388 410 0.99
9 13 0.00042 0.05 15.8 1.3 1 23 420 442 420 442 0.99
10 13 0.00031 0.037 16.2 2.5 1 23 451 473 451 473 0.99
11 13 0.063 7.5 8.9 0.6 1 23 482 504 482 504 0.98
12 13 0.3 36 6.8 1.1 2 23 514 535 513 535 0.94
13 13 0.12 14 8.1 1.0 1 23 544 566 544 566 0.98

Sequence Information

Coding Sequence
ATGGATACAAATACAATTGCAAGTCCTATCATTTGTCAGACTTGTGTCGCAATTGCCGAAAggtctttttatttcaaatcactGTGTATGGATACGGAGGAATTGATAGGATTTTTTGCTGTTGGCAATGATCAGACTGTAATTGAACTAAAGGATATATTCAATGGTGATAAAAACGAAGAAGCATTCCCCAAACAAGATTTTGCTATATGTCGATTCTGTATAAAGCATTCAGAAAAAAGTAACTTAGTCCCaatgaataatttaatgaagGAACAAATTTATGTACAAATGTTGCCAAAATACATGCCAGAAGTGGATCTTAGCATTACCAGGAATCCTTTAATTTGCACATGTTGTAGAGATAGTATAGAGTGTTATTTGAGGTTTGTAAGGAACTGTTTagatacagaaaataaaatagaagtaTACTACAAAAATAGAGAAAGGGTATGTTGGAGAAACATTCCCCTAGAGAGTGGTGAAGTCGATTTAAAGAATGAGATACAAATTTTATCAGAAGTGAAAATTTCTTCAGAAGTAGATCTGTATGAACTTAACAGGCACATGCTAACCCACAAGGCGCCTTCtgaagtaaaaatatacaagtgTGCTCTATGTCCATATAGAACGAAATGGAAGTACCATCTCAACAATCACATGCCAACCCACAAGGCACcttctgaagtaaaaatgtacaagtgtgctCTGTGTCCACATACAGTGAAACGGAAGTACGATTTTAACAGTCACATGCGAACCCACAAGGCCTCTTCTGAAGTAAAAGTTTACAAGTGTGCTCTATGTCCACATATAACGAAACGTAAGTCCCATCTGAACACTCACATGCTAACCCACAAGGCACcttctgaagtaaaaatgtacaagtgtgctCTGTGTCCACATACAGTGAAACGGAAGTACGATTTTAACAGTCACATGCGAACCCACAAGGCCTCTTCTGAAGTAAAAGTTTACAAGTATGCTCTATGTCCACATATAACGAAACGTAAGTCCCATCTGAACACTCACATGCTAACCCACAAGGCACcttctgaaataaaaatgtacaagtgtgctCTATGTCCACATACATCGAAATTGAAGTACTATTTCAACAGGCACATGCTAACCCACAAGGCACcttctgaagtaaaaatgtacaagtgtgctCAATGTCCACTTACAACGAAACAGAAGTACACACTTAACAGGCACATGCTAACCCACAGCAAGGCACCTTCTGAACTAAAAATGTATAAGTGTGCTCTATGTCCtcttacaacaaaatttaagtaCTATCTGAACAATCACATGGTAACCCACAAGGCGTCTTCcgaagtaaaaatgtacaagtgtcCTCTATGTCCACATACAACGAAATGGAAGTACAGTCTTAACAGGCACATGCTAACCCACAAGGCACCATCTGAAGTAAAGATGTATAAGTGTGCTCTATGTCCGTACACCATGAAATGGAAATACGATGTTAACAGGCACATGCTAACCCACAAGGCACCTTCTAAACTAAAAATGTGGAAGTGTGTTCTATGTCCACATACAATGAAATGGAAGTATGATCTTAACAGTCACATGCTAACCCACAAGGCACCATCTGAAGTGAAGATGTACAAGTGTGCTCTATGTCCATACACCATGAAATGGAAATACTATGTTAACAGGCACATGCTAACCCACAAGGCACCttctaaactaaaaatatag
Protein Sequence
MDTNTIASPIICQTCVAIAERSFYFKSLCMDTEELIGFFAVGNDQTVIELKDIFNGDKNEEAFPKQDFAICRFCIKHSEKSNLVPMNNLMKEQIYVQMLPKYMPEVDLSITRNPLICTCCRDSIECYLRFVRNCLDTENKIEVYYKNRERVCWRNIPLESGEVDLKNEIQILSEVKISSEVDLYELNRHMLTHKAPSEVKIYKCALCPYRTKWKYHLNNHMPTHKAPSEVKMYKCALCPHTVKRKYDFNSHMRTHKASSEVKVYKCALCPHITKRKSHLNTHMLTHKAPSEVKMYKCALCPHTVKRKYDFNSHMRTHKASSEVKVYKYALCPHITKRKSHLNTHMLTHKAPSEIKMYKCALCPHTSKLKYYFNRHMLTHKAPSEVKMYKCAQCPLTTKQKYTLNRHMLTHSKAPSELKMYKCALCPLTTKFKYYLNNHMVTHKASSEVKMYKCPLCPHTTKWKYSLNRHMLTHKAPSEVKMYKCALCPYTMKWKYDVNRHMLTHKAPSKLKMWKCVLCPHTMKWKYDLNSHMLTHKAPSEVKMYKCALCPYTMKWKYYVNRHMLTHKAPSKLKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-