Rfun017809.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- Prdm15
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000011.1:1739463-1745637[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.6 7.9e+02 2.6 0.1 2 23 221 242 220 242 0.73 2 11 0.0042 0.5 12.7 0.1 2 23 368 389 367 389 0.95 3 11 0.0028 0.34 13.2 1.8 3 19 395 411 393 414 0.94 4 11 2.4e-05 0.0029 19.7 0.8 2 23 420 442 419 442 0.97 5 11 0.25 30 7.1 3.5 1 19 446 464 446 466 0.95 6 11 2.5e-05 0.003 19.6 0.2 1 23 477 499 477 499 0.97 7 11 0.86 1e+02 5.4 0.1 1 23 508 530 508 530 0.97 8 11 6.4e-05 0.0077 18.4 1.3 1 23 535 558 535 558 0.96 9 11 0.00019 0.023 16.8 1.4 2 23 566 587 566 587 0.98 10 11 0.00013 0.016 17.4 3.3 1 23 593 615 593 615 0.98 11 11 0.0013 0.15 14.3 4.4 1 23 633 656 633 656 0.97
Sequence Information
- Coding Sequence
- ATGGAACCTTTGGAAGGCATAATACAAGACGGTGTATTAGAATTTGAAATTAGAAACGCTGACAAACCAACAGTTTGTGGAATTTGCGGGGAGAACCATTCACCTAAAGAGTgcaatatcttaaaaataacaaaCCAAATCCCAGACAGAGTGATTCCATCTAAAGCAAGATTAACATTGCCAGATTCGTTGAAGATAAGCAAATTAGCCGATGGCACACATAACGTCTACGCCAGACATTTAATAGAACGAGGTACCCAATTCGGGCCTTTCCAAGCTAAAAAGCTCTTCACCTTGCACCCATCCATCGACTTTTCTCTCAAAATATTCACTGATGGAGACGAAGACCTGTCGGAATACTTTTTAGATACCAGCGATGAAAACGAATGCAGTTGGATGATGTTTGTCGCGCCAGCAAGTAATTTCGAGGAACAAAATACTATTTGCTACCAGGAAGGTGAGCATTTGTATTACGGTACGATAAGTGATGTGCAGCCAGGAGAGCCCTTAAAGGTATGGTACTCGCCACATTATGCCTCAAAAATGAAAAAGGGAATATTAAATACGAATAATTGTCAAGAAATTGTCATAGAAACAAGCGCTAAAGATGTGGAAAGCATACTTAAGAAAAAGAGTAATATATCTCCGAGAGATTCTTGGAGTTGCAAATTTTGTGGTAAAGTGGAAAAGGAACTGTCCGTGTTTGCCCTTCATTTGCTGGAGCATTATAGGGCTCAAATGAGGCGGCATTTGAAGAAACACTTAAGGTCTGTGCACATAAACAACATGCAACAAACTGTCGAAATTGAAAAAGAGACTCCCATAGTCATCCCCAAGGTGGAGGAAATGGAATGTAAAGAAGCGACGTCTGTAGGCGGACCTTTATTATTGAACGATATAATACCAGACAGTCTAGACAATTCGAGTTTGTTTTTACCACAAACGGACATGAGCCAGTTCGACCTGGGCAGTATCGAGAACCAAAACATGATGTTGGAGAACGACAACCTGAATCTGAACATGGACAACATATTGACGGAGAATGTGAAGGGCTTGGACTCTTTCAATTTCGACTTAAACGTGCCCGAATCTGAACAGTTAATCTGCGACGTTTGCCTGAAGAGCTTCGTTAAGCTGAGGTCTTTgatacaacacctcgatatacACACCGGAAAGTACTGGTGCCAAACTTGCGACAGGGTTTTCGCTCGCAAGGAAAATCTCGTGCACCACTCCTGTAACTCGTTCTACAAAGTAAAGTGCCCTCTCTGCGACACCATATTCTTCCAGAAAAAATACCTGACACGTCACATCAAAGTGTACCACAAGAGAGAATTCACGTGCGACCAGTGCCAGAAATATTTCGACAGCAAGAAGAGGCTGGAGATGCACAACTGTCCCAAAGTCCCGTTGAACAAGAAGGAGAAGTTCCCTTGCAATCTGTGCCCGAAGGTGTTCTTCAAGAAGTGGAATTTGGAGGAGCACATCGCCAGGCATAAGCGTATCAAGAAGAACGTCCCGTACATCTGCGCGGTGTGCAATATCATTTTGGGCTCGAGAAAATCGTATTTGCAGCACGTGAAGTTACACGACGGGCAATTCTTTCCGTGCGACGTGTGCGAGAAACAGTTCAAGAGGCACGATTCTTTGCTCGTGCATCAGAAACAGGTGCATTCGAACGAGGTCGTGGAGGAAACCTGCGACGTATGCCAAAAGAAAGTGAAATCGAAGAAGCTCCTTAAAATTCACATGGAAACGCACCGGAACGACAAGCCATACAAGTGCCTCAGATGCCAGGCGTCCTTCAAGCAGCGCACGAACCTAACCAAGCACGCGAAGAAACACAAAGTGTTCGAGGTCAATGTGGACTCGTTGTTCCAAGACAGCGTCGAGGTGTACCACTGTCCCAAATGTAAGAGGAACATGAAATTGAAGAGCTCCCTCCAGAGGCATATGAGGGTGTTTCACCCCGAGGACCAGGTGCCCGTCGAGGCCATGAAACCGCGAACGGGACGACTCGCCACTAAGAAACTGCTAGACGGATATAAGTTTAAAGACGTGAACGTCGATCCCGAGTCGAACGAGTCGGTGATGGACCTGAAACAGACGATAGAGAACATGAATTTCAACACGGACGAGGTGAATTGCGGCGAGAACAGCGATATCAACATCGAAATCGACAAGATTTTGAATAACGCCGATAATATAGATAGCTTCTTTAACGAGAGCAAATCATGCGATGGAATCGTCGAAAGTCTGATAAACATTGCCGCTAAAGAAAACCAGCTGAGTTCCGTTGGAAACCAGTACGTCACTAAGGAAGTATGCTTGTCCATGCCGGATTTAACTGAGAACGATACGGAAATTAAGCTGGAAATGGTAAAGGTGTACGATATTTGA
- Protein Sequence
- MEPLEGIIQDGVLEFEIRNADKPTVCGICGENHSPKECNILKITNQIPDRVIPSKARLTLPDSLKISKLADGTHNVYARHLIERGTQFGPFQAKKLFTLHPSIDFSLKIFTDGDEDLSEYFLDTSDENECSWMMFVAPASNFEEQNTICYQEGEHLYYGTISDVQPGEPLKVWYSPHYASKMKKGILNTNNCQEIVIETSAKDVESILKKKSNISPRDSWSCKFCGKVEKELSVFALHLLEHYRAQMRRHLKKHLRSVHINNMQQTVEIEKETPIVIPKVEEMECKEATSVGGPLLLNDIIPDSLDNSSLFLPQTDMSQFDLGSIENQNMMLENDNLNLNMDNILTENVKGLDSFNFDLNVPESEQLICDVCLKSFVKLRSLIQHLDIHTGKYWCQTCDRVFARKENLVHHSCNSFYKVKCPLCDTIFFQKKYLTRHIKVYHKREFTCDQCQKYFDSKKRLEMHNCPKVPLNKKEKFPCNLCPKVFFKKWNLEEHIARHKRIKKNVPYICAVCNIILGSRKSYLQHVKLHDGQFFPCDVCEKQFKRHDSLLVHQKQVHSNEVVEETCDVCQKKVKSKKLLKIHMETHRNDKPYKCLRCQASFKQRTNLTKHAKKHKVFEVNVDSLFQDSVEVYHCPKCKRNMKLKSSLQRHMRVFHPEDQVPVEAMKPRTGRLATKKLLDGYKFKDVNVDPESNESVMDLKQTIENMNFNTDEVNCGENSDINIEIDKILNNADNIDSFFNESKSCDGIVESLINIAAKENQLSSVGNQYVTKEVCLSMPDLTENDTEIKLEMVKVYDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -