Rfun031954.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- -
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000019.1:4736748-4738052[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.3 3.9e+02 3.6 0.9 1 10 95 104 95 109 0.81 2 11 0.00034 0.04 16.1 1.8 1 23 123 145 123 145 0.98 3 11 4.1e-05 0.0049 19.0 0.8 1 23 154 176 154 176 0.97 4 11 0.0002 0.024 16.8 1.6 1 23 185 207 185 207 0.98 5 11 0.00036 0.043 16.0 0.2 1 23 216 238 216 238 0.98 6 11 0.0083 1 11.7 2.9 1 23 247 269 247 269 0.98 7 11 4.6e-05 0.0055 18.8 0.7 1 23 278 300 278 300 0.97 8 11 6.8e-05 0.0082 18.3 0.9 1 23 309 331 309 331 0.98 9 11 0.072 8.6 8.8 0.2 1 23 340 362 340 362 0.94 10 11 0.00016 0.019 17.1 1.5 1 23 371 393 371 393 0.98 11 11 7.2e-05 0.0086 18.2 1.3 1 23 402 424 402 424 0.98
Sequence Information
- Coding Sequence
- ATGAAGACTGAAGAAATATTGGACACTGAGGACGAAGAAGTGGTAGTCAAAGAGGATCTTTGTGAAAGTCTTTCAGAAATAGCATCGGATGACGATACAATGATATGTAAATCAGACCACGGACTAAAGAAATTAACGCACAAAAGTTCCCTCGACACTTATACTACCAAATACAAACGTAACTCAGCCCATAAGGACACATCGGAAATAGCAACGTACAAATGCGGACTTACCTGTATAACTCATATGTTAACCCACAAGAATGATTGGGAAGTGGAAATGCACAAATGTCCACATTGTCCTCATAAAACGCACcgcattaaaaataatgggaTAACCCACAAGGATGAATCTGAAGTACAAATGTATGAGTGCGAATTATGTCCTTACACGACGAGAGACAAATGTACCTTAAAACAACACTTGCTAATCCACAAGGTTCCTTCCGAagtgaaaatgtataaatgtccACTTTGTCCGTATGTGAGTAAACGGAAGACTGACCTTACAAGGCATAGCGTAACCCACAAGGATGTATCTGAAGTACAAATGTATGAATGTGAATTATGTCCTCACACGACGAGATACAAACGTGCCTTAAAACGACACTTGCTGATCCACAAGGATCCTTCCGAagtgaaaatgtataaatgcCCACTTTGTCCGTATGAAAGTAAACAGAAGGATGGACTTACAATTCATAGCATAACCCACAAGGATGTATCTGAGGTACAAATGTATGAGTGCGAATTATGTCCTTTCGAAACCAGACACAAATGTTCCTTAAAAGAACACTTGCTGATCCACAAGGATCCTTCCGAagtgaaaatgtataaatgtccACTTTGTCCGTATGTGAGTAAACGGAAGACTGAACTTACAAGGCATAGCGTAACCCACAAGGATGTATCTGAAGTACAAATGTATGAGTGCGAATTATGTCCTTACGCGACGAGACACAAACGTGCCTTAAAACGACACTTGCTGATCCACAAGGATCCTTCGGAagtgaaaatgtataaatgcCCACTTTGTCCGTATGAGAGTAAATGGAAGACTGAACTTATAAGGCATAGCATAAACCACAAGGATGTATCTGAGGTACAAATGTATGAGTGCGAATTATGTCCTTACGTGACGAGGCATAAACGTACCTTAAAACAACACTTGCTGATCCACAAGGATCCTTCGGAagtgaaaatgtataaatgttcACTTTGTCCGTATGTGAGTAAACGGAAGACTGAACTTACAAGGCATAGCATAACACACAAGGATGTATCCGATATACAAATGTCTGAGTGA
- Protein Sequence
- MKTEEILDTEDEEVVVKEDLCESLSEIASDDDTMICKSDHGLKKLTHKSSLDTYTTKYKRNSAHKDTSEIATYKCGLTCITHMLTHKNDWEVEMHKCPHCPHKTHRIKNNGITHKDESEVQMYECELCPYTTRDKCTLKQHLLIHKVPSEVKMYKCPLCPYVSKRKTDLTRHSVTHKDVSEVQMYECELCPHTTRYKRALKRHLLIHKDPSEVKMYKCPLCPYESKQKDGLTIHSITHKDVSEVQMYECELCPFETRHKCSLKEHLLIHKDPSEVKMYKCPLCPYVSKRKTELTRHSVTHKDVSEVQMYECELCPYATRHKRALKRHLLIHKDPSEVKMYKCPLCPYESKWKTELIRHSINHKDVSEVQMYECELCPYVTRHKRTLKQHLLIHKDPSEVKMYKCSLCPYVSKRKTELTRHSITHKDVSDIQMSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01310825; iTF_01310920; iTF_01310840;
- 90% Identity
- -
- 80% Identity
- -