Rfun034221.2
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- -
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000020.1:10452294-10454288[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.013 1.6 11.1 0.6 1 23 55 77 55 77 0.98 2 16 0.00032 0.038 16.2 3.2 1 23 116 138 116 138 0.99 3 16 1.1e-05 0.0014 20.7 0.2 1 23 144 166 144 166 0.98 4 16 5.6e-06 0.00067 21.7 1.2 1 23 172 195 172 195 0.98 5 16 1 1.2e+02 5.1 0.5 2 23 202 224 201 224 0.91 6 16 0.0042 0.51 12.6 1.2 2 23 232 253 232 253 0.98 7 16 1.6 2e+02 4.5 0.4 1 23 271 293 271 293 0.96 8 16 0.0031 0.38 13.0 0.5 1 23 310 332 310 332 0.99 9 16 0.11 13 8.2 3.6 2 23 338 359 337 360 0.95 10 16 0.002 0.24 13.7 1.3 1 23 392 415 392 415 0.96 11 16 0.028 3.4 10.0 0.1 1 10 423 432 423 443 0.92 12 16 0.019 2.3 10.6 5.1 2 23 453 475 452 475 0.93 13 16 0.0018 0.21 13.8 2.1 1 20 495 514 495 516 0.95 14 16 0.011 1.3 11.4 1.2 2 23 531 552 530 552 0.97 15 16 2.2e-05 0.0026 19.8 3.2 1 21 557 577 557 580 0.96 16 16 0.089 11 8.5 0.6 3 23 588 608 586 608 0.97
Sequence Information
- Coding Sequence
- ATGGATCAAGATGGGATTGCCATTAAGCACGAAATAACAAACCAGGAAGAATGTGAATTTGAacttaaagaattaaaattagaagaagATGTACCTGAATatgtaaatgttaatttattctCTAGCATAAAAAACACAAGTGGACGGACTTTAACTGCAATTTACCAATGCGATCAGTGCCCCAGTAAATACAAAAAGATGGAATATCTAACCATACATTATGCCATACACAGTGGTGTAAAATCGTGCCATATCTGCTCTGAAaagttttcttgtaaaaaacagtttaaatgtcacttgaatcaacatataaaatatgcaatgGATGCAGAAAAGGAATTGAATTATACATGTGAGTATTGTCAGAAAAGTTTTAATTGCAGAAAAAGTCTTGTCATTCATATCAGAGTCCATACCAATGAAAGGCCATACAAATGTGAAATTTGTGGAGAAGGTTTTAAGCAGATGGGATCATTAAAAGTGCATTATGTGACCCATACAAAGGAAAGACAGTTTAAGTGTGAGattTGCAATGGCTCTTATACAACGGCATCTAGTTTGAGACGGCATAAGAGAAGAATACATGATAAAGGGAAGATTCTCAGGTGTGCAAAATGTGATGCCAAAATGTACAACATGGCCGATTTGAGAAACCATAGAATGAATTTTCATCCTAATATTGGCTATAAAAGAACATGCTCTATATGCTCGAATGTGTTTTTCAGTAAGGTCACGTATCAGCAACATATTAAGTCTCACGATAGTCAGGAGGAACAATTTCTAAGTGATAATACATTTCTTGGCAAGAATTACTTCTGTTTGCTCTGTGGCGATAAATTTTCTGCATATGAGATGTATGTCGAACACAGAGAAACACACTTGGGCTACAGTAAAGAGGAACTAGAAAAGGCTCAAAAAAGACGTCTGTTTAAATGTAAGTTATGTCCTATGGAAGCGAAAGTAAAAAGTGTGCTGTTTAAACATATGGAGACTCATATGGATAAAAAGAGTACATGTAAATTCTGTTATAAATCCTattcatatttcaaattaagGGTACATATGAGGGAAGTACATCATGCAGCCCAGTGTCTAGTGTGCGATAAGGTACTGTTGGGCCAACACCGTTTGCGATATCACTATAACAGACATCATCCGTCTGTTCGAAGAAAGTTTATCTGTCATATATGTGGGCAACAGTACATGATGAAGTATAAATTAAACCTACATATTAAGCTAGTGCACAAACAAAGGGCAactaagaattataaatgcAGTCACTGTGGGAAGAGGTTCTTAACCTCACTTATTTTAAGCTCTCATTTAAGCAGGTGCTATCAGAAGCAATCCAAGCTTAAATGCTCCCTTTGCCACACTACTTTTAATACACATAAACAACTATTAAgccataaattattattacacaaaaGAAATGTAAACCATAAAAATAGGAGACCGCTACAAGATAAACCTCTTAAACATTTCCGTTGCGAGACTTGCAAGAAAATCTTCAGATTCAGCAAAAACTACAAGACCCATAAAATTTGGAAGACTTGCGTAGAGTTCATAAATAACATAAGGTGTAAGAAGAAATGTAacgtctgctttaaatatttggcCAGTGATGTTTCCTTGAAACGTCACATGAAACTACATTCCGATTGTGAATATAGCTGTAGGATTTGCGGGAAAATGTATAAGCAGAGTGAAGCGCTGAGGCGGCATATGAAATGCCGTCACCCTGACGAGAGAATGTATTGGTGTTATTATTGCAGTGAAGGGTTTGACAAGATGAATCAGTTGACTAACCATAATAAGGTCCATGAAGTGAAAGAGGAATTTTTGAACGATGATATTGATTGTGTCGCTGATAATATCACATATGATTCAATAAAAAGAGAACCTATTCATATAAAGGAAGAATATGGAGCATTATCAGAATAA
- Protein Sequence
- MDQDGIAIKHEITNQEECEFELKELKLEEDVPEYVNVNLFSSIKNTSGRTLTAIYQCDQCPSKYKKMEYLTIHYAIHSGVKSCHICSEKFSCKKQFKCHLNQHIKYAMDAEKELNYTCEYCQKSFNCRKSLVIHIRVHTNERPYKCEICGEGFKQMGSLKVHYVTHTKERQFKCEICNGSYTTASSLRRHKRRIHDKGKILRCAKCDAKMYNMADLRNHRMNFHPNIGYKRTCSICSNVFFSKVTYQQHIKSHDSQEEQFLSDNTFLGKNYFCLLCGDKFSAYEMYVEHRETHLGYSKEELEKAQKRRLFKCKLCPMEAKVKSVLFKHMETHMDKKSTCKFCYKSYSYFKLRVHMREVHHAAQCLVCDKVLLGQHRLRYHYNRHHPSVRRKFICHICGQQYMMKYKLNLHIKLVHKQRATKNYKCSHCGKRFLTSLILSSHLSRCYQKQSKLKCSLCHTTFNTHKQLLSHKLLLHKRNVNHKNRRPLQDKPLKHFRCETCKKIFRFSKNYKTHKIWKTCVEFINNIRCKKKCNVCFKYLASDVSLKRHMKLHSDCEYSCRICGKMYKQSEALRRHMKCRHPDERMYWCYYCSEGFDKMNQLTNHNKVHEVKEEFLNDDIDCVADNITYDSIKREPIHIKEEYGALSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -