Basic Information

Insect: Rosalia funebris
Gene Symbol: -
Assembly: GCA_037954035.1
Location: JAZFAV010000011.1:12319036-12320946[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0063 0.76 12.1 0.2 1 20 235 254 235 256 0.94

2 10 0.076 9.1 8.7 1.1 2 23 264 285 263 285 0.95

3 10 4.1e-05 0.0049 19.0 0.2 3 23 293 313 291 313 0.98

4 10 1.9e-05 0.0023 20.0 0.2 1 23 319 341 319 341 0.99

5 10 4.5e-06 0.00054 22.0 3.2 1 23 347 369 347 369 0.96

6 10 1.6e-07 1.9e-05 26.6 6.2 1 23 375 398 375 398 0.97

7 10 0.00012 0.015 17.5 0.3 1 20 404 423 404 426 0.92

8 10 3e-05 0.0036 19.4 0.5 1 23 432 454 432 454 0.97

9 10 0.025 3 10.2 6.5 1 23 465 487 465 487 0.98

10 10 0.0096 1.1 11.5 3.7 2 23 492 514 491 514 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0063	0.76	12.1	0.2	1	20	235	254	235	256	0.94
2	10	0.076	9.1	8.7	1.1	2	23	264	285	263	285	0.95
3	10	4.1e-05	0.0049	19.0	0.2	3	23	293	313	291	313	0.98
4	10	1.9e-05	0.0023	20.0	0.2	1	23	319	341	319	341	0.99
5	10	4.5e-06	0.00054	22.0	3.2	1	23	347	369	347	369	0.96
6	10	1.6e-07	1.9e-05	26.6	6.2	1	23	375	398	375	398	0.97
7	10	0.00012	0.015	17.5	0.3	1	20	404	423	404	426	0.92
8	10	3e-05	0.0036	19.4	0.5	1	23	432	454	432	454	0.97
9	10	0.025	3	10.2	6.5	1	23	465	487	465	487	0.98
10	10	0.0096	1.1	11.5	3.7	2	23	492	514	491	514	0.94

Sequence Information

Coding Sequence: atgtccaaatctaataaaataaaggaaatccATTTGGAAAAAGTTTGCCGAGCGTGTTTAAGTGAAAGGGGCCCTTTGAGAGAAATACATCCGACTAAAATACCTAAAATGATGGAGAGTTGTGCCTCTATACAGGTGTCCGAGGATGATGGGTTACCCAGTAAAGTTTGTGTCAcatgttttcatttaataacaaaattatacactttTAAGAAGAAACTGGAAAGAAGTGATAGACTATTACGACAATATTTGAATCAGTCAAAATTTAAACAGAGTGATATAATTAACATTGCTCTAAGTGAAGCCGAAATTCATGAAATAATAGATGTTAACAATGGAGgaagttttaaagatgataatGCTGACTTGAGTGAAGAAGACATTCCATTAAGTCGACGTTTACTTCAGAGGACGTCTGTCCACGATAAttgtaaaatagaaattatagcTAAAAATGAAGCATTGCAAGAATTAGATTTAAGCGAATCACCTATTGAATGTTTTAAAAGTGAGGATACCGTACAAATTTTTACAGATGGTCCACCACCATTAGTTCCGTTGGCACCAATTAACAAAAGCAGTTATAGTGAAACAATAGTCAAAGATTTACCAACTGACACCCCACCATTAATCCCTATAAAACCTCTAGTAAATATAGATGCCCTAGAAAATATCGTCGAGcaaaatgataatataaaatatcgaTGTAACGTGTGCAATACAGAATTTATGTCATTGGTCGATTTAAAAGAGCACAAATTAAATACTTGTCAGTCAAATGCTTTACAGTGCAACATTTGTCATAGGGAGTATAAAGGAACCAAGAGGTTAATTGGCCATTTGAAGGCACATAAGATAGTCAAAGATTATGGGTGTAAAATTTGCGGTAAATGGTACCCAAATCCAAGTACATTCACAGTACATATGCGAACGCATACTGGTGAGCGCCCGTTCAAATGCCAAATATGCAATAAAGGTTTTGTACGTTGGGCTGGAGTTTCTGGACATATGAAGACGCATGAAACGAGTAAACCATTTAAGTGTGAAACCTGTGGCAAGTGTTTTAAAATCTCATCCAACCTTGAAAGGCATAAGATATTGCATTCCGGGAGCCTACCATTCTGTTGTAATTACTGTGGAAAGTGCTTTAGTCAGTCCGATAATTTACAATTGCATATCCGAACATACCATACCAATGAACGTCCTTATTTGTGCAGTGAATGTGGAAAAGGTTTCGTTAGTTCAACGAGACTCAATCGCCATATGTGGGTACACTCTGGTTATAAACCATACATCTGCTCATCTTGCCCTAAGTCTTACTCGAATTCTAACGATTTGAAAAATCATGAAAGGGGTCACTGGGGTAAAAAATCCGACGACGACAAACATTATGCTTGCGATCAAtgtgaaatgaaattttatcatCCATGTAGGCTACGGAGACATAAAAAAACTCATGAAAAGTCTAAGGAGTGCCATATCtgttataaaacattttcttctcATGGCATATTGACTAAgcatattgaaaataaacacgGATTGACATACGTGGAAGAGAGCATTTTGCAGCCTGATGAAGGCGTTAGTCAGATCTTTGTGCAGTATCATCCACAGGAGAATAAGACAGGAGACACTGAGGAGGTGTCAGGGTACGAGAACGCAGATCCTCTCAATGTAGCCAAGGCAGAAACAGAGTTTCTTTAG
Protein Sequence: MSKSNKIKEIHLEKVCRACLSERGPLREIHPTKIPKMMESCASIQVSEDDGLPSKVCVTCFHLITKLYTFKKKLERSDRLLRQYLNQSKFKQSDIINIALSEAEIHEIIDVNNGGSFKDDNADLSEEDIPLSRRLLQRTSVHDNCKIEIIAKNEALQELDLSESPIECFKSEDTVQIFTDGPPPLVPLAPINKSSYSETIVKDLPTDTPPLIPIKPLVNIDALENIVEQNDNIKYRCNVCNTEFMSLVDLKEHKLNTCQSNALQCNICHREYKGTKRLIGHLKAHKIVKDYGCKICGKWYPNPSTFTVHMRTHTGERPFKCQICNKGFVRWAGVSGHMKTHETSKPFKCETCGKCFKISSNLERHKILHSGSLPFCCNYCGKCFSQSDNLQLHIRTYHTNERPYLCSECGKGFVSSTRLNRHMWVHSGYKPYICSSCPKSYSNSNDLKNHERGHWGKKSDDDKHYACDQCEMKFYHPCRLRRHKKTHEKSKECHICYKTFSSHGILTKHIENKHGLTYVEESILQPDEGVSQIFVQYHPQENKTGDTEEVSGYENADPLNVAKAETEFL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -