Rfun052081.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rosalia funebris
Gene Symbol
salm
Assembly
GCA_037954035.1
Location
JAZFAV010000034.1:16737040-16754090[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 9.3e-06 0.0011 21.0 0.9 1 23 320 342 320 342 0.98
2 9 1.3e-05 0.0015 20.6 1.9 1 23 348 370 348 370 0.98
3 9 0.12 14 8.1 3.8 2 23 681 702 680 702 0.98
4 9 8e-08 9.6e-06 27.5 0.6 1 23 708 730 708 730 0.97
5 9 0.00011 0.013 17.6 2.6 1 23 740 762 740 762 0.98
6 9 0.14 17 7.8 4.5 2 23 1033 1054 1032 1054 0.97
7 9 0.098 12 8.3 0.9 1 14 1060 1073 1060 1074 0.93
8 9 2.6e-06 0.00031 22.8 4.0 3 23 1235 1255 1233 1255 0.96
9 9 3.7e-07 4.4e-05 25.4 0.9 1 23 1261 1283 1261 1283 0.98

Sequence Information

Coding Sequence
ATGTGCCAGCGTTGCCAGGAGCAGTTTACTGAAGTGCAGGAATACTTGACGCACAAGGCCGAATGTGACAAGAAAGCCATCAAGCACGACGACCCCGCGCACTCGGATCCCGAGGACATGGTGGTCTCCGAGGAAGACGACGACGACGAAGAAACGGGAGGCAAGCGACTGGAACGCATGCGAAGACACCGCCAGGACGCCGCTAACAATAACAGCGTCGAAGAGAATTCACCCGACGAAAATAGCCAGAGGCTGGGATTCCCCTTTCCTGTACCTGCAGCTCCCGGCCACGTCACACTGGAAGCCCTGCAGAATACTAAAGTAGCCGTAGCACAATTCGCTGCTACAGCTATGGCTAACAACACGGACAACGAGGCAGCCCTACAGGAACTCGCCGTTCTCCAATCAACGTTATTCACGCTACAACACCAGCAAGTACTACAGTTACAGCTAATAAATCAACTACAGCATCAATTACAAATCGACAGGacaaaagaagaagaagaacaatCCCCAGTGTCGCCGCCTCCATCGGAAAACGAAGCCGAAACCACTCCAATTGAATCACCGCCCGTGCCGCAAGCTATACCCGTATCTCGGGAACCTACACCCGCCTCATTGCCACCCCCGATAAGTCAACCGATGGCGCAACAACCTCCAGCCTCAGAGCCTCTGCCGGAAGTCAGAGTTCCGTCGTCTCTACCTCCACAAATTCAACCCCCCATGTGTTcgatatcatcatcattagccTCTACGATAATTACTCACACGGACGAACAGCCGTCGCTAGATGAACCAAATACCCTGGAAATGTTACAAAAGAGAGCAcaagaagtattagaaaatgCAAGTCAGGGCCTCTTAGCCACGAATCTGGCCGACGAGTTGGCATTTAGGAAAAGTAAAGGATCCATGTCGCCCTACGATTCTAAGGGTAGAAACGAGCCGTTCTTCAAGCACCGTTGTAGATATTGTGGAAAAGTGTTTGGGTCTGATTCGGCGCTTCAAATACATATCCGTTCTCATACTGGGGAACGCCCATACAAGTGCAATGTTTGTGGTAGCAGATTCACTACGAAAGGCAATTTAAAAGTTCATTTCCAAAGACATAGTCAAAAGTTTCCTCATATCAAAATGAACCCTAACCCGGTTCCGGAACACCTCGATAAATACCATCCCCCTCTACTAGCGCAGCTTGGACAACAACCGTCGTTGTCACCTGGAGGCCCCCCGCACCCGCCTCATTTGGGATTTCCCGGTGGCCACCCGTATCCTCCCACATCCTTGCCCTTGTTCAGGCCACAAGGTCCACCTCCGCCGGATTTATTAACCGGCCGCCTTCAACCTTCCCCCCACAGACTTCACGACCCTCCTCCGAGATTATTTCCTCCTCATCCTCTGTTTATGAAAAGAGAGGAGCAAGAGATGGCTGCAGATCTGAGTAAACCTCAGAGGTCCCCCACGCCGATAGACGATAAGAATCACAGAGAAGAGGAAGCAGATGAGAAACGCGAATCGAGTGAAGAACCTAAAGTTCCGTTACCTCAAATTACTCCGAAGCAAGAACCAAACTTTATGGATAACGAAAACGAGAACGAACCTGAAAGATACTCCTCTCCTATGCCGTATGACGAATGCAGCAACAGTAGTAAGTACAGCAATGAAGACATGCTGGAACAGAGGAGTCCCGGTGCTGACCAATCTGAAAATATGCAAGACGAACCCGAAAATTTGTCACACAGGAGTAATTCGATTACGGTGCCGCTAAGTATTTCCACTGGTCAGAGACTACCGGCGAATTTCTCGTTCGGACATGCCAGTTCTCCGCCGAGCAGTACTTCATCCGGTAGTCTGGGTCCTTTTCCTACTACGCCGCTTGCCGACATAACCAAGGATCCTTCTATTTACACGAACCTCTTGCCGAGACCTGGGAGCAATGATAATTCGTGGGAGAGTCTCATAGAAGTGACAAAAACCTCGGAGACTAGTAAGCTGCAGCAACTCGTCGACAATATCGAACATAAACTTTCAGATCCGAATCAGTGTGTGATATGCCACCGGGTGTTGTCGTGTAAGAGCGCCCTGCAGATGCACTATCGTACGCATACCGGAGAAAGGCCGTTCAAGTGTAAGATTTGTGGCCGCGCGTTCACCACCAAAGGCAACCTCAAGACGCACATGGGGGTGCATCGCGCGAAACCACCCATGCGCGTGCTCCATCAGTGCCCCGTCTGCCACAAGAAATTCACCAACGCCCTGGTGCTTCAGCAACATATCCGCCTCCATACAGGCGAACCCACCGATCTCACCCCCGAACAGATCCAAGCGGCGGAAATAAAAGACTTTCCTTCCCCGGGGGGCTTCCCCAGCCTCCAGAATTCCATGCATCCATTCCTCAGCCAGGGATTTTCCGTCCCAGGACTATCCCCGTTGGGTCACTCGGGGATGCCCTTGAACATGAAATTCGACAGGGACGTCAAGTCGGAGCACGAGAGTATAGATGACGATGACTACGATGACGAGGATGTCATGAGTAACTCCGAGCAACAGAATATGCCGCCGTTTTCCTCCTCTTCGCCTACGGATATTCAAAATACTCCAATGCCTATTAGTACGATGGCCTCGCAATTTTCCATGGGTGGATTGAACTGCTCCGCGGAGGATCTCTGTTCGAATAGAGCGACGGCTTCTACGCCGCCTCCGATGCAGAATGGTGAAAAGTCTCCAAGCCAGTCGGGAGTTACCAGCCCTGGAAGCTCGGAAGTACGGTCGTCTCCTAATCAGATACCCGTCCAGGTACCTCGTCCTCCATCGTCCCAACAGGCCAGCAGTCCTACACCATCGGACAGTTCCATGGGTGCTCTGGATCTGACACCTAGAAATAATCAACCACCAATAACTAGTCCAGGACCAACTACTCCAGGTGCCGCACACCCATCTTTATTTCCATCTTTCGGTCTCCTATCCTCTGGAGGTCAATCACCTCTCATGTCCTCCGCATTGTCATCGCTGACGTCGTCGGTGCTGACTTCCACTTCCTTCAGCCCACTGAGGTTGGCGGTTGGACCAGTGGGAAGTTTAGGACGGGGCAACACCACCTGCAACTTGTGCTTCAAGACGTTCGCCTGCCACTCCGCCCTGGAGATCCACTACAGGAGCCACACCAAGGAACGGCCCTTCAAGTGCTCCGTGTGCGACAGGGGCTTCTCCACCAAGGACGGTTGTGTGTGCAAGCAGAGGCGTATCCAGGATGAAGTGGAACCGTGGAGGGCACGTAAGCGGAAAACTGCCCTTCGCAAGTCAGTACCTTCCGTTTTTCCGCTACCGATGAGCCCTGGATACGCCTCGAGCTGGATGCAAATGGCGGGCAACATGAAGCAACACATGCTCACGCACAAGATCCGCGACATGCCGCAGCACATGTTCGAGAACAAGCCGCCCTCGATCAGCGGAGACGATTCCACCCCCCTGCCGCCTAGCTTGCCCCTTCGGGAACCGACGACCAGCGACGGGGATCAGCAGCCGCAACAGCCGCAACAGCCGCAGCAACAGCAGCAGCAACATCAACCACCCCAGGCGCTCCAGCCTCTGCCGCAACTCAAGCAGCAGGAACAGGAACCCCAGCAAATCAAAAGAGAACCCACAGAGACTGAATTACCACTACCGAAGCGACCACCAAGCTTACAATCAAGTAAGCACTTGTGCCACGTATGCAATAAGAACTTCTCGTCCAGTTCGGCCCTACAAATCCACATGCGGACACACACCGGCGACAAGCCCTTTCGATGCACCGTCTGCCAGAAGGCCTTCACAACAAAAGGCAACCTGAAGGTACACATGGGAACCCATATGTGGAGCAACGGGGCATCACGACGAGGTCGTCGCATGTCGCTCGATCTGCCCCCCATCCCCATGACACCCAAGGATTCCGAATTTCTGCAGCGGAGGCCAGACCTCTTCTACCCGTACCTCCCGGCTCCATTCCTTAACGGAATGCAACAGAAGCTGAACGAGATTTCCATGGTGCATAACAGCCAGAACGGGATGACAGGTGCCGGTAAATACAGTGGACTGCTCGGCTTCGGCTACCCGCCGCCAGAGGCCATCCGATCTCAGGCGAGTTCTCCCGAACGTTCCGAGAGACCGCCCAGCCGCGAACCCGATACCCGAGGTCTTTGGGACCTGCATTTCGATCGAAAAACGACAGCAGACGCTCCGCGAGATGACCTCTTGTCAGCCAACAGGGAGGGCCTAGCCGCCTGA
Protein Sequence
MCQRCQEQFTEVQEYLTHKAECDKKAIKHDDPAHSDPEDMVVSEEDDDDEETGGKRLERMRRHRQDAANNNSVEENSPDENSQRLGFPFPVPAAPGHVTLEALQNTKVAVAQFAATAMANNTDNEAALQELAVLQSTLFTLQHQQVLQLQLINQLQHQLQIDRTKEEEEQSPVSPPPSENEAETTPIESPPVPQAIPVSREPTPASLPPPISQPMAQQPPASEPLPEVRVPSSLPPQIQPPMCSISSSLASTIITHTDEQPSLDEPNTLEMLQKRAQEVLENASQGLLATNLADELAFRKSKGSMSPYDSKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPYKCNVCGSRFTTKGNLKVHFQRHSQKFPHIKMNPNPVPEHLDKYHPPLLAQLGQQPSLSPGGPPHPPHLGFPGGHPYPPTSLPLFRPQGPPPPDLLTGRLQPSPHRLHDPPPRLFPPHPLFMKREEQEMAADLSKPQRSPTPIDDKNHREEEADEKRESSEEPKVPLPQITPKQEPNFMDNENENEPERYSSPMPYDECSNSSKYSNEDMLEQRSPGADQSENMQDEPENLSHRSNSITVPLSISTGQRLPANFSFGHASSPPSSTSSGSLGPFPTTPLADITKDPSIYTNLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEIKDFPSPGGFPSLQNSMHPFLSQGFSVPGLSPLGHSGMPLNMKFDRDVKSEHESIDDDDYDDEDVMSNSEQQNMPPFSSSSPTDIQNTPMPISTMASQFSMGGLNCSAEDLCSNRATASTPPPMQNGEKSPSQSGVTSPGSSEVRSSPNQIPVQVPRPPSSQQASSPTPSDSSMGALDLTPRNNQPPITSPGPTTPGAAHPSLFPSFGLLSSGGQSPLMSSALSSLTSSVLTSTSFSPLRLAVGPVGSLGRGNTTCNLCFKTFACHSALEIHYRSHTKERPFKCSVCDRGFSTKDGCVCKQRRIQDEVEPWRARKRKTALRKSVPSVFPLPMSPGYASSWMQMAGNMKQHMLTHKIRDMPQHMFENKPPSISGDDSTPLPPSLPLREPTTSDGDQQPQQPQQPQQQQQQHQPPQALQPLPQLKQQEQEPQQIKREPTETELPLPKRPPSLQSSKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEISMVHNSQNGMTGAGKYSGLLGFGYPPPEAIRSQASSPERSERPPSREPDTRGLWDLHFDRKTTADAPRDDLLSANREGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01330030;
90% Identity
-
80% Identity
-