Rfun005179.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- -
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000003.1:19580172-19582656[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.5 1e+03 2.2 1.2 3 23 171 188 171 188 0.85 2 13 0.68 81 5.7 3.4 2 23 193 213 192 213 0.96 3 13 2.5e-07 3e-05 26.0 1.2 1 23 217 239 217 239 0.98 4 13 2.7e-06 0.00032 22.7 0.7 1 23 245 267 245 267 0.99 5 13 0.0057 0.68 12.2 2.8 1 21 270 290 270 291 0.93 6 13 1.6 1.9e+02 4.5 1.4 3 19 328 341 326 346 0.70 7 13 4.2e-05 0.005 19.0 1.8 2 23 360 381 359 381 0.98 8 13 3.3e-06 0.00039 22.4 2.9 1 23 387 409 387 409 0.99 9 13 1.2e-06 0.00014 23.8 0.3 1 23 415 437 415 437 0.98 10 13 4.7e-05 0.0056 18.8 4.0 2 23 443 464 443 464 0.97 11 13 5.5e-06 0.00066 21.7 1.1 1 23 470 492 470 492 0.92 12 13 7.2e-05 0.0086 18.2 3.6 1 23 498 520 498 520 0.98 13 13 0.0062 0.75 12.1 4.5 1 23 526 548 526 548 0.98
Sequence Information
- Coding Sequence
- atgaagttacATATAAATGATATCGATGGGgatattaaagaatattgtgtagcttgtttaaataaaagctTATATATGCATAATTTAAATGCAAATGCAGAGAAGAAGACCTTGTTTAcgacattatttaatattaagCTTACAAAGTACTCAGAATGCCCtcaatttttatgtaatgtGTGTGATATGAAGCTCAATGTAACATATAGTTTCCAAAAAAGGGTAAGGGAATGCCTAGCACTGctagaagaatataatattaagaaCGGAAAACGCGATGCAGGTAAATTTGGTAAGAAAGGTGATGGAGAAATATCTAAAACCATAGCTCAAAGAAATAGTTCCAAAATACTACATATACCTTTAGATCTCGTTAATAAAATTGTGGAAGATTTTAAAAAGAAGCTTGCAGAGACTAAGACCTGTATTATTTGTGAATTTACTGCAGCTAATAGAAGAGCACTTTCGTTTCATATGGCATTATGTCATAGAGAAGAAAAGAATAATTGGTGTTTAGAATGCAacagaatttttgaaaattatcaagAACATAAGAAAATGCACAACACAAAGTGTCAGTGCCCATTTTGTAAACAAGAGACAAGTCCATCCCATTATGTAGAGCATTTGCAAAGCCATGCAGGTATTTTTGAATGTGACATATGTAGCAAAACATTCAAGAGTGCCAGTTggttaaaaaaacataaacgAATTCACACCAACGAGAAGCCCTATGTTTGTCCCAACTGTTCCAAGTCCTTTATACAGATAAGTTCACTCAGGTACCACTTAAACACCCACGGTCAATTCTATTGTGACATATGCaaaaaacattacaaaacagAGAATGACTTGGAAGAACATGAGTGCACTACGGAAATTTGGATAAAAGTTGACGATGCAACTGAAAATGGGGCAGATGACCATAATATATCTGTTATAGAAAGCAATGCGCTTAACCCAAGTGAATTACAGACTTTTTGTAAGGATTGTAATAAGAGAGTAAAGAGTTTAAGTCAgcacataaataaatatcatactTTAGCGCAACCGGCAAAACCTATCGCTAAGAAAGTGCAGTGTGGATTTTGTCAGAAAATATGCAGTAATCCCTACAAATTGAAAGTTCATATACGAACACACACAGGTGAATTGCCATATAAATGTAGGTATTGcgataaaaaaacatcaaatcgATCCCAGCTTATTAACCACGAACGGACGCATACCAAAGAGAAACCTTACATCTGTAACATCTGTGGAAAAGGCTTATCGCAATCCTCGGCTCTTAGAACACACATGAAGCAGCACACCGGGAAGCCAGAAGTTTGTGAGCTTTGCAACAAGAGATTCTGTAGGAAATCAGAATTAAGGCTTCATTTGAGTAAACATATGGGCGTAAAACCATTTCTGTGCACCGAATGTGGGAGGACGTTTGCCCAAAAGAGCCATCTTACGGAGCACACGGCAGGACACAGCGAAGAGAGGCCCTTCCAGTGCCAACACTGCCAAAAAGCCTTCAAAAAGAATATCCTATTGAaggaacatttaaaattgcatACGGGGGATAAACCTTTTAAATGCCCCTCATGCCCTTATAGTTGCTATAAGCAGTATAGACTTCTGCAGCATATGAAGCAGCACAGTAGCGACCCTGGTGTAGATATTGAAGATTCAACTGAGCACattctaaatatttcataa
- Protein Sequence
- MKLHINDIDGDIKEYCVACLNKSLYMHNLNANAEKKTLFTTLFNIKLTKYSECPQFLCNVCDMKLNVTYSFQKRVRECLALLEEYNIKNGKRDAGKFGKKGDGEISKTIAQRNSSKILHIPLDLVNKIVEDFKKKLAETKTCIICEFTAANRRALSFHMALCHREEKNNWCLECNRIFENYQEHKKMHNTKCQCPFCKQETSPSHYVEHLQSHAGIFECDICSKTFKSASWLKKHKRIHTNEKPYVCPNCSKSFIQISSLRYHLNTHGQFYCDICKKHYKTENDLEEHECTTEIWIKVDDATENGADDHNISVIESNALNPSELQTFCKDCNKRVKSLSQHINKYHTLAQPAKPIAKKVQCGFCQKICSNPYKLKVHIRTHTGELPYKCRYCDKKTSNRSQLINHERTHTKEKPYICNICGKGLSQSSALRTHMKQHTGKPEVCELCNKRFCRKSELRLHLSKHMGVKPFLCTECGRTFAQKSHLTEHTAGHSEERPFQCQHCQKAFKKNILLKEHLKLHTGDKPFKCPSCPYSCYKQYRLLQHMKQHSSDPGVDIEDSTEHILNIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -