Basic Information

Insect: Rosalia funebris
Gene Symbol: -
Assembly: GCA_037954035.1
Location: JAZFAV010000021.1:12135324-12138651[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.082 9.8 8.6 1.8 6 21 15 30 9 31 0.86

2 14 0.93 1.1e+02 5.3 0.1 1 12 152 163 152 166 0.89

3 14 0.36 43 6.6 4.6 1 21 301 321 301 322 0.95

4 14 0.0033 0.39 13.0 3.4 1 23 330 352 330 352 0.99

5 14 0.00015 0.018 17.2 2.0 1 23 370 392 370 392 0.99

6 14 0.025 3 10.2 0.6 1 23 423 444 423 444 0.95

7 14 8.6e-05 0.01 18.0 0.8 1 23 450 472 450 472 0.95

8 14 0.00026 0.031 16.4 0.1 1 20 478 497 478 499 0.94

9 14 3.3e-05 0.004 19.3 2.3 1 23 506 528 506 528 0.98

10 14 9e-06 0.0011 21.0 3.3 1 23 534 556 534 556 0.98

11 14 0.00014 0.017 17.3 6.4 1 23 562 584 562 584 0.99

12 14 2.8e-06 0.00033 22.7 0.4 1 23 590 612 590 612 0.98

13 14 5e-05 0.0059 18.7 0.1 1 23 616 638 616 638 0.97

14 14 0.00054 0.064 15.5 0.1 1 23 646 669 646 669 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.082	9.8	8.6	1.8	6	21	15	30	9	31	0.86
2	14	0.93	1.1e+02	5.3	0.1	1	12	152	163	152	166	0.89
3	14	0.36	43	6.6	4.6	1	21	301	321	301	322	0.95
4	14	0.0033	0.39	13.0	3.4	1	23	330	352	330	352	0.99
5	14	0.00015	0.018	17.2	2.0	1	23	370	392	370	392	0.99
6	14	0.025	3	10.2	0.6	1	23	423	444	423	444	0.95
7	14	8.6e-05	0.01	18.0	0.8	1	23	450	472	450	472	0.95
8	14	0.00026	0.031	16.4	0.1	1	20	478	497	478	499	0.94
9	14	3.3e-05	0.004	19.3	2.3	1	23	506	528	506	528	0.98
10	14	9e-06	0.0011	21.0	3.3	1	23	534	556	534	556	0.98
11	14	0.00014	0.017	17.3	6.4	1	23	562	584	562	584	0.99
12	14	2.8e-06	0.00033	22.7	0.4	1	23	590	612	590	612	0.98
13	14	5e-05	0.0059	18.7	0.1	1	23	616	638	616	638	0.97
14	14	0.00054	0.064	15.5	0.1	1	23	646	669	646	669	0.96

Sequence Information

Coding Sequence: ATGGGAACACTGACGACATTATCTTTGAACTGCCCCTTTTGTTGCGACGAAAAATTTTCTTCCCACAGCTCTCTAAAGTATCATATTTTGAGCATTATAGATAATTTATTGTGCCCAGCTTGTAATGCTAGATTTGATACCATGTTAGAGCTAGCCGAGCACCTGGGTAGGGAGTGCAAGGAGAAAGAAATCGAGCCTCCTGTACTAGAAAGTGTAACACTCcataatataaaacaagaaGCTCCTCAGGAGGCTTTGCTTACCCAAAATACTACATCCGAAAGTCAAAACACTAATAATACCGAGATGGTATTACTTAATCCTAAGGTAGAGAAGGAGGAGACTCACACTGACGATAACCAAAGTATTCTAGCGAAGGCTTTATTATCGAAGTCCCCCAAGAATAATTCTCAGGACGACGAGTCTGAAGAACAGCTGCGTCCAGGAGTCCTGTATATGTGTCAGATGTGCAACATGAGTTTTAACTCCATCGAGGAACATTTGGGGAAATATCATGTGGGAGAAGAATTAGTACTggaaACCGACGAAAATGTGCATATGGAGGAAACCAATTCTGAAATGGTAGAGAACGATGAGGCTGGTATGGACTTGGACGAGAACATGTTTGGATTACAGGAAGAGGAATCTGACAATGGCGAGGAACTAGCCGAAGACGAAAAATCTTCACACACAGTCGAAGAACAGCAATGTCTGGACAAAGATGGTCGGGTTTACACTAGAAAAGTCGTAAAAATCGACAAGTTCTGGGTGGACCAACAAGAGAAAGAAGAGCTGAACGGTCCCATgatcgaaaaatatttattagagaaCGGGAAGATTAGGAAAATCACTGAGGAGGAGGCAAACGATGTCTTGGACAAGGACTCGATAATACAAATTCATCAGTGTTCTAAGTGCTATCTACAGTTTCCCAATATAGATCACTATAATAAACATCTGTGTGACCCTTCAAAAGTGAAGAATAAATTCAAATGCACCCATTGCACTGCAGTGTTTCTCAATTACCACGCGTTGACGGCTCATATGAATTCGCACATAACGAGAGATTCAACCGGGAAAATCAAGAGAGTTGTAACGTTGGGCCCCTACACGTGCGATATATGCAAGACTATGTTTCCCTCATTCAAGAGCCTGCGTTTGCACAAGAGAATGCACGACCCGATCAAGGACAAAATCCTGGAGGCCCCCGTAAGTTACAGTATAACGGGCCCCATAGACGAGGGTAGGGAAATCGTACGCCAAATGTTCATCTGCAGCATCTGCAACAAGACATACGACAAGGAGTACGAGGAAATACACATGAGGTCGCACAACCAGGAGGAGAACTTCGACTGCTCCGTGTGCAATCGCAAGTTTTACACAAAGGAAAACCTGGAGATGCATGCAAAGGCCCACAGCAACGGCAAGAAGTTCGCCTGTTCCTATTGTAAGAAACCGTTCACCACGTACGACGCCCTCCAGGACCACGTGGCGAACCAGTGCCAGAAACGGCAGTACGAGTGCCAGTATTGCGGCAGGCGCTTCTCCCGGCCCCACGAGAAGGTCAAGCACGAACGCATCCACACCGGCGAGAAGCCCCACGTCTGCCAGATATGCGGGAAAGCGTTCCGCGTGAGCTACTGCCTTACACTGCACTTGCGGACTCATTCGGGCACGCGGCCCTACCAGTGCAACACCTGCGGGAAGCGTTTCAAGTCGCACAGCGTGTACAACCACCACTTGCTCACGCACTCTGATGTCAGAGCTTATAAATGCCCGTACTGCCCCAAGGCATTCAAGACCAGCGTGCAGCTGGCGGGGCACAAGAACAGTCACATCAAGCCGTTCGCCTGCACGGACTGCAACAGGCCTTTCGCTTCCTTGTACGCAGTCAGGGCCCACATGGAGACCCACAAGCGGGAGAACAACTTGAAGTTTGACTGTTGGATGTGCGGGGCGACTTACGCCAGGGCCTTCGCCCTTAGGGACCACATAAAAAGTCAACATGCAGGAGAGAATATCAATGTGGATGACAATATTCTGATCGAGTTGGAGACAAACGATATCACTAATCAGATAGAGAGGGAGATGAAGGATTCTGTCGAGCCACAGATGGAGGTGGAAGAGACGGCATAG
Protein Sequence: MGTLTTLSLNCPFCCDEKFSSHSSLKYHILSIIDNLLCPACNARFDTMLELAEHLGRECKEKEIEPPVLESVTLHNIKQEAPQEALLTQNTTSESQNTNNTEMVLLNPKVEKEETHTDDNQSILAKALLSKSPKNNSQDDESEEQLRPGVLYMCQMCNMSFNSIEEHLGKYHVGEELVLETDENVHMEETNSEMVENDEAGMDLDENMFGLQEEESDNGEELAEDEKSSHTVEEQQCLDKDGRVYTRKVVKIDKFWVDQQEKEELNGPMIEKYLLENGKIRKITEEEANDVLDKDSIIQIHQCSKCYLQFPNIDHYNKHLCDPSKVKNKFKCTHCTAVFLNYHALTAHMNSHITRDSTGKIKRVVTLGPYTCDICKTMFPSFKSLRLHKRMHDPIKDKILEAPVSYSITGPIDEGREIVRQMFICSICNKTYDKEYEEIHMRSHNQEENFDCSVCNRKFYTKENLEMHAKAHSNGKKFACSYCKKPFTTYDALQDHVANQCQKRQYECQYCGRRFSRPHEKVKHERIHTGEKPHVCQICGKAFRVSYCLTLHLRTHSGTRPYQCNTCGKRFKSHSVYNHHLLTHSDVRAYKCPYCPKAFKTSVQLAGHKNSHIKPFACTDCNRPFASLYAVRAHMETHKRENNLKFDCWMCGATYARAFALRDHIKSQHAGENINVDDNILIELETNDITNQIEREMKDSVEPQMEVEETA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -