Rfun013556.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- -
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000008.1:6591475-6608155[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0038 0.46 12.8 1.5 2 23 180 202 180 202 0.95 2 20 0.085 10 8.5 0.9 1 19 331 349 331 351 0.97 3 20 5.8 7e+02 2.8 6.1 1 23 381 404 381 404 0.92 4 20 0.037 4.4 9.7 0.5 1 21 437 457 437 460 0.90 5 20 2.3e-05 0.0028 19.7 1.3 2 23 531 552 531 552 0.98 6 20 1.1 1.3e+02 5.1 0.5 1 21 569 588 569 591 0.74 7 20 0.0014 0.17 14.2 0.4 2 23 595 616 594 616 0.96 8 20 0.00023 0.028 16.6 0.1 2 23 646 667 645 667 0.96 9 20 3.2 3.9e+02 3.6 1.2 1 23 689 712 689 712 0.93 10 20 0.12 14 8.1 2.6 2 23 726 747 725 747 0.97 11 20 2.4e-05 0.0028 19.7 6.5 1 23 782 804 782 804 0.98 12 20 0.005 0.6 12.4 0.2 3 23 821 842 821 842 0.91 13 20 0.00038 0.046 15.9 1.5 1 23 865 887 865 887 0.98 14 20 0.00037 0.045 16.0 0.6 2 23 901 923 900 923 0.95 15 20 0.008 0.96 11.8 0.1 1 23 941 963 941 963 0.95 16 20 3.3 3.9e+02 3.5 0.0 1 23 1004 1027 1004 1027 0.93 17 20 0.00022 0.026 16.7 0.9 2 23 1038 1059 1038 1059 0.97 18 20 0.00015 0.018 17.2 0.1 1 23 1100 1123 1100 1123 0.96 19 20 3.4e-05 0.0041 19.2 1.1 1 23 1131 1153 1131 1153 0.98 20 20 0.0029 0.34 13.2 0.1 1 23 1168 1191 1168 1191 0.96
Sequence Information
- Coding Sequence
- ATGGCAGACTCAAGACTCGGTAATTTCCAATCTTGTTGTAGACTGTGCCTGTGCGAGAAGTTGGACACTTTAAAATCGGTTTTTGATGAAACTGCAGAAGATCGGTCGCTACCGCAGAAGATTTCGCAATACGTTGCCATTGAAATCAATGTCTCTGACAAACTAACAACAATGATCTGCCATCAGTGCATTACCAAAGTTAATAACTGGCACGATTATAAGCAAGAATGTGCAAATAACCAGACCAAGTTACAGCAATGGTTGCACAGTTGTCCAACAAATAACATTGCTAATATGAGCcttcaaattaaagaagagcCCATGGGAGACGCGGATGAAATCAGGGAGTCTGATCCCGAACCGGACAATCATATTGTCGAGGTTTTGGTAAAAAATGAACCCATAGATCCACCGGACGAACCCATGGAGGAAGAGTATAATGAACTCCCTCCAGCTCTTACCCCTCACCCTCCCGATGGTAGTCAAGATTCGGAAAATTCCCAGGACGGCAATACACCCgGTACCATGAATAGTAGACAGTGTAGCATTTGCAACAAACTGTTTAGTAGTTCGGGCAACAGGAGGAAGCACGAGAAGCAGATACATGGCAAACATCAGCCGGGGCCTGATGCAGGTAGGAGGAGTCAAATGAATCGGGTTTCCATTGCCAAAACGTCTTACGATGCCGTAAACCAGCAAGACAGGCCAGAGGGTTCATCGGGCGTGCAAGAAATCCAAGAAAATGACACGGAGCTCACCGAGAGCGATCAACTAAAGATACAATTCGCAGCCGGGTTGAAACTATTGCAGAAAAATGCCACACCGATTTCTTGCGAGGCTCTCTCGAAAATAGAGCTGAGCTACATAGAAAAATGCAAGGCGATGGTAAACATGCACAGGAATTTGGAGTGCGCCTGCCACAACGTCCCCCATCCCAACCTCAAAGGTTTACTTTCGCACCTGAGAGCTCTGCGGATATGGTTCCCGGTTTTCACGTGTTACAATTGCATGATAACATTCACGGACAGATCCACGTTTACCAGACACAACGTGAGGTGTCCCAAGACCTCGCTGGAGACGATCGTCAAGCTCAGCAACCTGAGGAAGCGCAGCGAGGTGAAGACCAGGTTGTACCAGAACTTCAAGTGTACTTCCTGCAGGTTTATGTACAGCTTCCACGATGATTTTTGCAAACACGTCGACGAGGATCACGCATTTGGGGAGCCCCCGTTCGTCTGTTCGTGTACTAGGCAATTCGAAAACGTAGAAGATTATAAGGATCACGTATACGTTAGTTGTTTAGTGCAGTATTATTGTGATATTTGTTTCATCACAACCAAGACCTTGGATGAGTTCCAGAAACATTCCGCCGAAGTACACGACAGTTCAGAGGGTTTCATTTTATTACAAGACGATAATTATAAGATGAGAAAGCCGTTCCATCACAAAGAAGTGTCGGATGAGAGCGTTATCGTTTCTGGGAAGCGGGAGAGAAGAACTTCTATTAAAGCCCCAATTCTGGATACCGAAGACGATGATGATATCACTAGAAAACTCGTCCATCCCGTCATTCTTCATTCAACCTCTCGCGAATGCCCTATCTGCGGTAAGGAATATTCCACTCACAATAACATGGTGCGTCACTATAAAACCCATCTGGAGCTGAACGGGAAGCCGCAAGAAGAAACAGAGGACGACTCGTTTTACTCGTGCCCCGATTGTGGTGGTATGTACACTACGGTCGAGTGGCACCAGCACTTGCAGGACAAGCACGAATTAAAATCGTGCGGGGAGTGCGGGAAAATCTTCCAGTTTCAAAGCGAACTGGACCAACACAGGAGCGTACACTTGAATTTGAAAGTGTACAGAGACTCCAAGACGCAGTCGTACAAGACCACGATGATCAGCCCTGGATCTGAGGGGGAAGTAATGCTCATGTGCGAGATTTGCGACGTGATGTTCCCCACGAAAGAGGAACTGAAACAGCACAAACTCGTGCACGAAGAAATCGTACCAAAGCTAGAAGTCACGGAGCAAGATAGTCCCACGCCGACGGAAAGTAAATATTCCTGCAAGCCCTGCAATAAGTTCTATTCTAGCTACGGCGGTATTTGGGATCACAACAAAAAGAAACACCCCGAGAAGAAGACTCCGTTCACAGACGAGTGGCCCAAACAGTGTAAATTATGCGACAAGGTGTGCCAGACGGGCGCCGCTTTCTTCAGACACAAGCAGATACACGAGAAGGATAGAATAAATGCAGATGGCGCAGACGTTACCCCACTGAAAACACCTTTGATAAAGCCCAAGAGAGAGATGGGGAAAGAAGAGGAAGAATCTTACCATACCTGTAAACGTTGCTTCAAAGTTTTTTCCTCCAGATATAACTTGAAGAACCACATGAAATCTCACGGTATAAACGTTAGCCCGTCGACTAAAAAGGTGATCAAGAAGAGTTGGTGCGACATATGCCAACGAGGTTTCCCTAATAATGAGTCATTGGCTAGACATAAGGAGGACGAACATATCGGCGATGATATGTCCAATTTAGCCGGCCAAAGTGACGATCTTGACAATCAGGTGCCGTTCATTTTCACTTGCGACGTGTGCGTCATGACCTTTACAACCAAAATGGCGTTGAAGAAACACAAGGAGAAGCACGCCCAGGAGATGAAACCTGCCCCGAAACAGAACCAAGTGTACTGCAAGTATTGCAAGATCGCTTTCGACTCCATATCAGCTCTAACCAAGCACATGCACGTGGAACACGACGAGACCGCCAAGCCGAAAGTCGGGAAGATCAAAGAAAAACCGCGCCAGTTCAGTTGTGGCGTTTGCAAGAAAGTCTTCTTGACGAGCGCGGCGCTCTCGACTCACATGGGCTGGCACAAGCGCAGCCCCGCCTCTGGCGACCCCAACAAACCGGCGAAGATCCTCAAGCAGAACAAGATCATCGACAAGGTGGCCAACAACGTGAAAGTCAAGCAGGAGCCGATCGACGCTCCCAAGTTCCAGTGCACCACCTGCCTGGCGGAGCTGCCCAACGACACGGCCCTCCAGGTGCACATCTTGGAAAAGCACCGCAGCGTCAGCGCCATCATGCTTATACCCAGATGCAACGTGTGTAACAAAGACTTCGCCACTCAGGACGAGTACGAGACCCACAAACGCCTGCACGATTTCCTCGAGAGGCAGAAGCAGCACGACCAGAACGTGCAGGAGTTACAGGACATCGTGCCGAAGCTGGAAGGGGGCGCCAAGCTGTCGGCCGCCGCGCAGGCCAAGCTAGGCAAGGGATTCCCGTGCAAGTATTGCCCGGCGGCGTTCAGCAGAGCGGACACGCTCAACGGGCACGTCAGACAGTATCACAAGGAGTACGTGCAGAACGAGTTCAAATGTACGCAGTGCGACAGAGTGTTCGAGAAGCAGAACTCTCTGAGCATCCACTTGAAGGTTCATGAGAAGCAGCGCTCCGTGGCGAACGCCCCCTCCAAGCCGTTATTCTCTTGCTCCATTTGCAACATGGGATTCGACTTACCCAAAGATCTGAGGGCGCACACTATCAGTGCACACCCATTCTGA
- Protein Sequence
- MADSRLGNFQSCCRLCLCEKLDTLKSVFDETAEDRSLPQKISQYVAIEINVSDKLTTMICHQCITKVNNWHDYKQECANNQTKLQQWLHSCPTNNIANMSLQIKEEPMGDADEIRESDPEPDNHIVEVLVKNEPIDPPDEPMEEEYNELPPALTPHPPDGSQDSENSQDGNTPGTMNSRQCSICNKLFSSSGNRRKHEKQIHGKHQPGPDAGRRSQMNRVSIAKTSYDAVNQQDRPEGSSGVQEIQENDTELTESDQLKIQFAAGLKLLQKNATPISCEALSKIELSYIEKCKAMVNMHRNLECACHNVPHPNLKGLLSHLRALRIWFPVFTCYNCMITFTDRSTFTRHNVRCPKTSLETIVKLSNLRKRSEVKTRLYQNFKCTSCRFMYSFHDDFCKHVDEDHAFGEPPFVCSCTRQFENVEDYKDHVYVSCLVQYYCDICFITTKTLDEFQKHSAEVHDSSEGFILLQDDNYKMRKPFHHKEVSDESVIVSGKRERRTSIKAPILDTEDDDDITRKLVHPVILHSTSRECPICGKEYSTHNNMVRHYKTHLELNGKPQEETEDDSFYSCPDCGGMYTTVEWHQHLQDKHELKSCGECGKIFQFQSELDQHRSVHLNLKVYRDSKTQSYKTTMISPGSEGEVMLMCEICDVMFPTKEELKQHKLVHEEIVPKLEVTEQDSPTPTESKYSCKPCNKFYSSYGGIWDHNKKKHPEKKTPFTDEWPKQCKLCDKVCQTGAAFFRHKQIHEKDRINADGADVTPLKTPLIKPKREMGKEEEESYHTCKRCFKVFSSRYNLKNHMKSHGINVSPSTKKVIKKSWCDICQRGFPNNESLARHKEDEHIGDDMSNLAGQSDDLDNQVPFIFTCDVCVMTFTTKMALKKHKEKHAQEMKPAPKQNQVYCKYCKIAFDSISALTKHMHVEHDETAKPKVGKIKEKPRQFSCGVCKKVFLTSAALSTHMGWHKRSPASGDPNKPAKILKQNKIIDKVANNVKVKQEPIDAPKFQCTTCLAELPNDTALQVHILEKHRSVSAIMLIPRCNVCNKDFATQDEYETHKRLHDFLERQKQHDQNVQELQDIVPKLEGGAKLSAAAQAKLGKGFPCKYCPAAFSRADTLNGHVRQYHKEYVQNEFKCTQCDRVFEKQNSLSIHLKVHEKQRSVANAPSKPLFSCSICNMGFDLPKDLRAHTISAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -