Basic Information

Insect: Rosalia funebris
Gene Symbol: -
Assembly: GCA_037954035.1
Location: JAZFAV010000034.1:23980683-23996624[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 7.1e-06 0.00085 21.4 1.8 2 23 114 135 113 135 0.96

2 10 0.0095 1.1 11.5 0.4 1 23 141 164 141 164 0.92

3 10 1.6e-06 0.00019 23.4 0.9 1 23 169 191 169 191 0.98

4 10 4.6e-06 0.00055 22.0 2.3 2 23 202 223 201 223 0.97

5 10 2.3e-07 2.8e-05 26.0 0.9 1 23 230 252 230 252 0.97

6 10 2.7e-05 0.0032 19.5 1.6 3 23 264 284 262 284 0.92

7 10 8.8e-05 0.011 17.9 4.4 1 23 290 312 290 312 0.99

8 10 3.7e-05 0.0045 19.1 1.7 1 23 318 340 318 340 0.96

9 10 8.1e-08 9.8e-06 27.5 0.4 1 23 346 368 346 368 0.99

10 10 0.00013 0.015 17.4 0.1 1 23 374 398 374 398 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	7.1e-06	0.00085	21.4	1.8	2	23	114	135	113	135	0.96
2	10	0.0095	1.1	11.5	0.4	1	23	141	164	141	164	0.92
3	10	1.6e-06	0.00019	23.4	0.9	1	23	169	191	169	191	0.98
4	10	4.6e-06	0.00055	22.0	2.3	2	23	202	223	201	223	0.97
5	10	2.3e-07	2.8e-05	26.0	0.9	1	23	230	252	230	252	0.97
6	10	2.7e-05	0.0032	19.5	1.6	3	23	264	284	262	284	0.92
7	10	8.8e-05	0.011	17.9	4.4	1	23	290	312	290	312	0.99
8	10	3.7e-05	0.0045	19.1	1.7	1	23	318	340	318	340	0.96
9	10	8.1e-08	9.8e-06	27.5	0.4	1	23	346	368	346	368	0.99
10	10	0.00013	0.015	17.4	0.1	1	23	374	398	374	398	0.93

Sequence Information

Coding Sequence: ATGACGATTGtttttttcgacatcaaagggATTGTGCATGTTGAATGGGTACCTGAAGGTCAAACTGTCAACCAAGAGTACTACAAAGAGGTGTTGAACACGCTTCGTGAACGGGTAAGAAGAAAACGGTCCGAATTGTGGAAAGATCGGTCCTGGGTTTTTCATCAAGACAACGCCCAGCCGCCCCACCAAAACGAAGATGCCGGGGAGCACAAACCCGAGCTGAACAACGACATGACATTCGACTCGCCCCCATCCAAAGACGACGAAGACTACATCCCCGCCGTCCCCAACACGGAGAACCTGGGCCAGGTGAAGAGGGCCAGGAGCAAGAACCAAGTGTGCCACGTGTGCGGCGCCACCTTTGCCAGGGCGAACCACCTGACCAGGCACATGACGTTGCATCGCGCCGTCTTGGTGCATCAATGCGACAGGTGCGAGAAGGCCTTTGCCGCCGATGATTACCTTAGGAAGCACGTGGAAGAGGAGCACATTAACAAGCCGTACGTGTGCACGGTTTGCAATAAACCGTTCACCAGGGGCGAGCACCTGATAAGGCACTTGAAGGTGCACCAGTCCAATTCGGAGAAGGAGGCCAACTTGAAGTGTTCCATTTGCGACAACACGTTTACCAGatctGATCATTTGGCGCGCCACACAAAAGTCCATCTCCTGCAGGACAAGAGACACGTCTGCGTGGAGTGCGGCAAGGCCTTCAACCGCCTGGACAACCTGAAGACCCACCAGAGGATCCACACCGGCCTCAAGGACACCTCCAAACTGCACCTGTGCATCTACTGCGGAAAGGAGTTCAATAATTCAAGTAACATGATCGTCCACATGCGCCGGCATACCGGAGAGAGGCCTTATAAGTGTAGCGAGTGCGGAAAAGGGTTTCCGAGGTCGCACGATTTGAAGTGCCACGAGAGGACGCACTCCGGCGAGAAGCCGTACCTGTGCACCCTGTGCGGGAAGTCGTTCAACAAAAGCAACAAACTGctCCGCCACAGCCGCGTACACACCGGCGAGCGCCCCTACGTCTGCAACATATGCGGGCGGGCCTTCACCCAATCAAACGACCTGTCCCTCCATATGCGCCGACACACCGGGGCGCGACCGTACGCTTGCGGCGTATGCCCCGCCCGCTTCATCCAGTCCGGCCAATTGAAGACCCACCGACGCACAACCGGCCACTGGATGGAAACGCAGCCCGACCTCAAGGGCGGGCATAGGGTGGAGCCCGTCACGCCCGCCCACGAGCCCATGCCGATCCGCTTCAAATCGCACGGCAAGTTCAAGAAAGAGGTGGAGATGGTGGTGATGGAGGAGCACCAGCACCAGCTGCCGGACGTGCAGAACCTGCGGCCGACGACGGAAGCGCCCGCCGTCCAAGAGGTGGGCATAGCGCAGGTGGAGGCGGTGCAGGCGCAGCCACAGCGCATCCTCATGGGGATAATGGGCAACATCAAGATCCAGAACGAGATGCAGCCGCTCATCATCGACAGCTCGAAGCTGGTCGAGCTGCACACGGCCGGGTTGGTCAGTCTGCCGTCTGTCATACAGACCACCAACGGGGACGAGATCAAGCTGAAATCGGAGGTGGCCACGTTCAATATAACGCATTGCGAGGAGGGCATGGACAAGCAGGATGCGGGCGCCAGCGGCACATTCCAGGACAACGCCGTGGTGTATTCCAGCGTGGGGCACACCTCCACTACGTACACCACCAGCGAAAACTTCAACTTTCAGAACTATCACTGA
Protein Sequence: MTIVFFDIKGIVHVEWVPEGQTVNQEYYKEVLNTLRERVRRKRSELWKDRSWVFHQDNAQPPHQNEDAGEHKPELNNDMTFDSPPSKDDEDYIPAVPNTENLGQVKRARSKNQVCHVCGATFARANHLTRHMTLHRAVLVHQCDRCEKAFAADDYLRKHVEEEHINKPYVCTVCNKPFTRGEHLIRHLKVHQSNSEKEANLKCSICDNTFTRSDHLARHTKVHLLQDKRHVCVECGKAFNRLDNLKTHQRIHTGLKDTSKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCSECGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNICGRAFTQSNDLSLHMRRHTGARPYACGVCPARFIQSGQLKTHRRTTGHWMETQPDLKGGHRVEPVTPAHEPMPIRFKSHGKFKKEVEMVVMEEHQHQLPDVQNLRPTTEAPAVQEVGIAQVEAVQAQPQRILMGIMGNIKIQNEMQPLIIDSSKLVELHTAGLVSLPSVIQTTNGDEIKLKSEVATFNITHCEEGMDKQDAGASGTFQDNAVVYSSVGHTSTTYTTSENFNFQNYH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -