Rfun031931.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- -
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000019.1:4666239-4668281[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.021 2.5 10.5 1.9 1 23 123 145 123 145 0.98 2 18 0.00064 0.076 15.2 0.2 1 23 154 176 154 176 0.98 3 18 3.7e-05 0.0044 19.1 0.7 1 23 185 207 185 207 0.98 4 18 0.00038 0.045 15.9 3.0 1 23 216 238 216 238 0.98 5 18 0.021 2.5 10.5 1.9 1 23 247 269 247 269 0.98 6 18 0.00064 0.076 15.2 0.2 1 23 278 300 278 300 0.98 7 18 2.9e-05 0.0035 19.4 0.6 1 23 309 331 309 331 0.98 8 18 3.4e-05 0.0041 19.2 1.1 1 23 340 362 340 362 0.99 9 18 0.009 1.1 11.6 1.1 1 23 371 393 371 393 0.98 10 18 0.00029 0.034 16.3 0.9 1 23 402 424 402 424 0.98 11 18 0.048 5.7 9.3 2.2 1 23 433 455 433 455 0.98 12 18 0.3 36 6.8 0.2 1 23 464 486 464 486 0.92 13 18 0.00019 0.022 16.9 1.1 1 23 495 517 495 517 0.98 14 18 0.00023 0.028 16.6 0.7 1 23 526 548 526 548 0.98 15 18 0.00019 0.022 16.9 1.1 1 23 557 579 557 579 0.98 16 18 0.047 5.7 9.3 0.1 1 23 588 610 588 610 0.98 17 18 0.17 20 7.6 0.6 1 23 619 641 619 641 0.98 18 18 0.0072 0.87 11.9 0.4 1 23 650 672 650 672 0.98
Sequence Information
- Coding Sequence
- ATGAAGACTGAAGAAATATTGGACACTGAGGACGAAGAAGTGGTAGTAAAAGAGGATCTTTGTGAAAGTCTTTCAGAAATAGCATCGGATGACGATACAACGATATGTAAATCTGACCACAGACTAAAGAAATTAAAGCACAAAAGTTCCCTCGACACTTATACTACCAAATACAAACGTAACTCAGCCCATAAGGACACATCGGAAATAGCAACGTACAAATGCGGACTTACCTGTATAACTCATATGTTAACCCCCAAGAATGATTCGGAAGTGGAAATGCACAAATGTCCACGTTGTCCCCATAAAACGCACcgcattaaaaataatgggaTAACCCACAAGGATGTATCTGAAGTACAAATGTATCAGTGCGAATTATGTCCTTTCGAGACGAGACATAAACGTTCCATAAAACAACACTTGCTGATCCACAAGGATCCTTCCGAagtgaaaatgtataaatgtccACTTTGTCCGTATGAGAGTAAAGTAAAGGGTGAACTTACAAGGCATAGCATAACCCACAAGGATGCATCTGAGGTACAAATGTATGAGTGCGAATTATGTCCTTACGCGACGAGGCATAAACCTTCCTTAAAACGACACATGCTGATCCACAAGGATCCTTCCGAagtgaaaatgtataaatgcCCACTTTGTCCGTATAAGTGCAAACAGAAGAATGGACTTACAAAACATAGCATAACCCACAAGGATGTATCTGAAGTACAAATGTATCAGTGCGAATTATGTCCTTTCGAGACGAGACATAAACGTTCCATAAAACAACACTTGCTGATCCACAAGGATCCTTCCGAagtgaaaatgtataaatgtccACTTTGTCCGTATGAGAGTAAAGTAAAGGGTGAACTTACAAGGCATAGCATAACCCACAAGGATGCATCTGAGGTACAAATGTATGAGTGCGAATTATGTCCTTACGCGACGAGCCATAAACCTTCCTTAAAACGACACATGCTGATCCACAAGGATCCTTCCGAagtgaaaatgtataaatgcCCACTTTGTCTGTATGTGAGTAAACGGAAGAGTGAACTTACAAGGCATACCATAACCCACAAGGATGTATCTGAGGTACAAATGTATGAGTGCGAATTATGTCCTTTCGAGACGAGACATAGAAGTTCCATAAAACAACACTTGCTGATCCATAAGGATCCTTCCGAagtgaaaatgtataaatgtccACTTTGTCCGTATGAGAGTAAACGGAAGAAGGGACTTACAAAGCATAGCATAACCCACAAGGATGTATCTGAAGTACAAATGTTTGAGTGCGAATTATGTCCTTACGCGACGAGACACAAACATATCTTAAAACAACACTTGCTGATCCACAAGGATCCTTCCGAagtgaaaatgtataaatgcCCACTTTGTCCGTATGAGAGTAAATGGAAGAGTGAACTTACAGGGCATAGCATAAACCACAAGGATGTATCTGAGGTACAAATGTATGAGTGCGAATTATGTCCTCACACGACGAGATACAAAAGTGCCTTAAAACAACACTTGCTGATCCACAAGGATCCGTCCGAagtgaaaatgtataaatgtccACTTTGTCCGTATGAGAGTAAACGGAAGAATGCACTTACAAAGCATAGCATAACCCACAAGGATGTATCTGAAGTACAAATGTATGAGTGCGAATTATGTCCTCACACGACGAGATACAAAAGTGCCTTAAAACAACACTTGCTGATCCACAAGGATCCTTCCGaattgaaaatgtataaatgcCCGCTTTGTCCGTATGAGGGTAAATTAAAGGGTGAAGTTACAAGGCATAGCATAACCCACAAGGATGCATCTGAAGTACAAATGTATGAGTGCGAAGTATGTTCTTACGCGGCGAGACACAAACAAATCTTAAAACAACACTTGCTAATCCACAAGGATCCTTCCCAAGTGATAATTTATAAATGTCCACTTTGTCCGTATGTAAGTAAATGGAAGACTGAACTTACAAGGCATAGCATAACCCACAAGGATGTATCTGAAGTACAAATGTAA
- Protein Sequence
- MKTEEILDTEDEEVVVKEDLCESLSEIASDDDTTICKSDHRLKKLKHKSSLDTYTTKYKRNSAHKDTSEIATYKCGLTCITHMLTPKNDSEVEMHKCPRCPHKTHRIKNNGITHKDVSEVQMYQCELCPFETRHKRSIKQHLLIHKDPSEVKMYKCPLCPYESKVKGELTRHSITHKDASEVQMYECELCPYATRHKPSLKRHMLIHKDPSEVKMYKCPLCPYKCKQKNGLTKHSITHKDVSEVQMYQCELCPFETRHKRSIKQHLLIHKDPSEVKMYKCPLCPYESKVKGELTRHSITHKDASEVQMYECELCPYATSHKPSLKRHMLIHKDPSEVKMYKCPLCLYVSKRKSELTRHTITHKDVSEVQMYECELCPFETRHRSSIKQHLLIHKDPSEVKMYKCPLCPYESKRKKGLTKHSITHKDVSEVQMFECELCPYATRHKHILKQHLLIHKDPSEVKMYKCPLCPYESKWKSELTGHSINHKDVSEVQMYECELCPHTTRYKSALKQHLLIHKDPSEVKMYKCPLCPYESKRKNALTKHSITHKDVSEVQMYECELCPHTTRYKSALKQHLLIHKDPSELKMYKCPLCPYEGKLKGEVTRHSITHKDASEVQMYECEVCSYAARHKQILKQHLLIHKDPSQVIIYKCPLCPYVSKWKTELTRHSITHKDVSEVQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01310907;
- 90% Identity
- -
- 80% Identity
- -