Rfun017515.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rosalia funebris
Gene Symbol
-
Assembly
GCA_037954035.1
Location
JAZFAV010000010.1:23026547-23031069[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 1.5e-06 0.00018 23.5 0.9 2 23 266 287 265 287 0.98
2 9 2e-06 0.00024 23.1 5.1 1 23 293 315 293 315 0.98
3 9 8e-07 9.5e-05 24.4 2.3 1 23 321 343 321 343 0.99
4 9 1.2e-08 1.5e-06 30.1 2.3 1 23 349 371 349 371 0.98
5 9 3.2e-06 0.00038 22.5 5.5 1 23 377 399 377 399 0.99
6 9 1.5e-05 0.0018 20.4 1.1 1 23 405 427 405 427 0.97
7 9 2e-06 0.00024 23.1 1.2 1 23 433 455 433 455 0.99
8 9 0.00015 0.018 17.2 0.4 3 23 463 483 461 483 0.97
9 9 1.9e-07 2.3e-05 26.3 2.8 1 23 489 511 489 511 0.98

Sequence Information

Coding Sequence
aTGGCATTggaatttgataaaatatgtaGAATTTGTCTAAATGAAGGTATAatgatgtcaatatttaaagtaaatatatcaaAGAAGATGATGTCTTGTGCATCTGTTCAGGTTTGGCAAAATGATGGGTTGCCTGCgcaaatttgtaataaatgttcTGCAAAGCTCCATATATCGTTccagtttaaaaaacaatgtgaaaaatcTGATGCAAAACTGCGTCAAATTTTATCGAGTATGCCAAGTCAAGAAGAAATGCAGGAACACAATCAAATTCAACAACAACAGGAAATGCAACAAATTCAAAACGCACAATCAGAAACTCAGCAAATGAACAAACTTGATTCGTTAGATATAACACAACAATTAACGCAAGGTACACAGCAGAATAATTGTGTTTACATAGAATGCCCGCCCATTTTAGATCAACTGTCACAAGAACAGAATTCTTTTATTCCTTCATCACAATCAGGTCCACCACCTCTCACCCAAATTAACTATAACATTCAACACCAGAATCATTTACAGCTGAGTGGttataatatacagagtgttagTCAAGTACAGGTATATAATGGAACATATGCTATGCCTTTGCAACCAATGCAGTCTACGAATATGGTACATAGTCAAGTGATTCCCCAAATGCAACTTCCGCAGCAACCGCAATTGCCTCCTTTACAGCCATTAATGCAACAAACCTTACCTCCTGTAATGAATGCAGATGATAAAGATAGAAAAAAAGTTATCAAAACAAGTGGTAAGAAGGAAGTAAAACTTACTGAAATGGGAAAACAGTGTCCAATATGTAACAAAATCTTTGGAACCGCCACTAAATTAAGTAGGCACATGAAAACCCATTCAACAGACATGCctcataaatgtaaaatttgtaataagGCCTTTTCTCATAGTggcaattataaaatacatctCAGGATGCATACGGACGAGAGACCGTTTCGATGTACTGTGTGCGATAAAGGCTGTCGTCAAGCTCAAGATTTGGAGAAGCATATGAGGACACATACTGGTGAAAAACCTCACAAATGCCACATATGTCCTAGAGCATTTTCGACAAGTTCAAATTTAATAGCGCACATCAGGACCCACACAGGGGAAAGACCGTATGTTTGCTGTGTTTGTCAGAAGGCCTTTTGTCAGTCCAATGAACTTACAAAACACATGCGCACACATACCGGGGAAAAATCGCATAtctgtaatatttgtaataaggGTTTTAATGGATCCAGTACCCTAATAGTCCACAGACGGTCACATACCGGTGAGAAACCCTATGTCTGCACCATCTGTAGTAAAGGTTTTGCACAATCTAGCTGTCTCGCTGTACATATGAAACGCCATAACAGTGAAAAGAATTTCGGCTGCAATCAATGCGATAACACCTTTATAACAAATTCTGAACTGAAAGAGCACCTTGCATCTCATATGAACGACAAACAGTACAACTGCACCATCTGCAATAAAACATTTAGTAGACTCACGGACTTTAACAAACACATAAGAACACATTCGAACTTGGAAGAGAGCTAA
Protein Sequence
MALEFDKICRICLNEGIMMSIFKVNISKKMMSCASVQVWQNDGLPAQICNKCSAKLHISFQFKKQCEKSDAKLRQILSSMPSQEEMQEHNQIQQQQEMQQIQNAQSETQQMNKLDSLDITQQLTQGTQQNNCVYIECPPILDQLSQEQNSFIPSSQSGPPPLTQINYNIQHQNHLQLSGYNIQSVSQVQVYNGTYAMPLQPMQSTNMVHSQVIPQMQLPQQPQLPPLQPLMQQTLPPVMNADDKDRKKVIKTSGKKEVKLTEMGKQCPICNKIFGTATKLSRHMKTHSTDMPHKCKICNKAFSHSGNYKIHLRMHTDERPFRCTVCDKGCRQAQDLEKHMRTHTGEKPHKCHICPRAFSTSSNLIAHIRTHTGERPYVCCVCQKAFCQSNELTKHMRTHTGEKSHICNICNKGFNGSSTLIVHRRSHTGEKPYVCTICSKGFAQSSCLAVHMKRHNSEKNFGCNQCDNTFITNSELKEHLASHMNDKQYNCTICNKTFSRLTDFNKHIRTHSNLEES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01296720;
90% Identity
-
80% Identity
-