Basic Information

Insect: Rosalia funebris
Gene Symbol: -
Assembly: GCA_037954035.1
Location: JAZFAV010000034.1:12452481-12461970[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 6.6e-06 0.00079 21.5 0.2 2 23 175 197 174 197 0.95

2 11 0.066 7.8 8.9 4.6 1 19 230 248 230 253 0.91

3 11 2.1e-07 2.5e-05 26.2 0.3 1 23 259 281 259 281 0.98

4 11 0.00016 0.019 17.1 0.5 2 20 287 305 286 307 0.95

5 11 1.1e-05 0.0013 20.8 1.1 1 23 318 340 318 340 0.97

6 11 0.00034 0.04 16.1 0.6 1 23 351 373 351 373 0.99

7 11 5.4e-06 0.00064 21.8 0.3 1 23 379 401 379 401 0.98

8 11 2.4e-07 2.9e-05 26.0 1.3 1 23 407 429 407 429 0.99

9 11 6.7e-06 0.0008 21.5 3.6 1 23 435 457 435 457 0.96

10 11 0.00033 0.04 16.1 3.4 1 23 463 486 463 486 0.96

11 11 6.6e-06 0.00079 21.5 1.1 2 23 493 514 492 514 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	6.6e-06	0.00079	21.5	0.2	2	23	175	197	174	197	0.95
2	11	0.066	7.8	8.9	4.6	1	19	230	248	230	253	0.91
3	11	2.1e-07	2.5e-05	26.2	0.3	1	23	259	281	259	281	0.98
4	11	0.00016	0.019	17.1	0.5	2	20	287	305	286	307	0.95
5	11	1.1e-05	0.0013	20.8	1.1	1	23	318	340	318	340	0.97
6	11	0.00034	0.04	16.1	0.6	1	23	351	373	351	373	0.99
7	11	5.4e-06	0.00064	21.8	0.3	1	23	379	401	379	401	0.98
8	11	2.4e-07	2.9e-05	26.0	1.3	1	23	407	429	407	429	0.99
9	11	6.7e-06	0.0008	21.5	3.6	1	23	435	457	435	457	0.96
10	11	0.00033	0.04	16.1	3.4	1	23	463	486	463	486	0.96
11	11	6.6e-06	0.00079	21.5	1.1	2	23	493	514	492	514	0.96

Sequence Information

Coding Sequence: ATGGAGGACTCCATAGTGGTAATCCCTTTAAAAACAGAAGCTAACAATGTAAAAGCTGAAAAAGTACAGTCGGTAGATAATGTACCAACTGAGAATACTGAGACGCATACGGTTGTACTTCAAAACGTACAATTAAATGATGGTGAGGAACTGCCCATAATCTTCaacaatttttcacaaaacgaTTCAGATGGAAATCTGGAAATTTCTACTATGGAAGATGAAGTTATTCATACCTACATTATACAgAATACTGAATATGAGCACCATGAAGGCCAAGAAGAAATAATCTATGAAGAACAAGCAGACGGAGAGGATGAGAGTGTGGTACAATATGTAATAGAAGATCAGACCGAGTATGAAGAAACTGCTGATCAGGTTGGTGAATTTGAAGATGAGTCTATGGTGTAcgcttttgaagaaaatgaagaaTCTGTGGACAACCCCCCAGAAGAAAAAGAGGAAGAGGTAGAGGAGGAGGATGTACAAGACTCTGACGTTAAAAAAGAAGCTGAATTGGTTGAGTGTGACATTTGCAATAAAGTTTTCAAAACCACTGcgGGTCTCAAGAGGCATATAACTGTTAATCACGGCGATAATGATAATACAGAGGAAGAAGATCCCCTCACTTTTCAGTTGTGTCCGTGCTGTGGGGAGCCCTCTGATTCTGCTCATACGATAGGGGACTTCAAATGTGACCAGTGCGACAAACTATTTGTCCAACAAAACTGCCTGGATCGCCATTGCAGCATCGAACATCCGCTTAATGATAAGTATGTATGCGCAGAATGCAAGAAGTCGTTTAACACGAAGGACCTCCTCATCGACCATATGAGGATACACCCACTTAAATCCGTAAAGTGCCTGGGCTGTAACAGGGAATTCACTAGGAAGTACCACCTTGACAGGCATATCGGCCAAACGGGTTGCATGGGACAGCCTAGAAAAGCTTTCGATTGTCGGgTTTGCAAACGGTTCTTTACTCGTAAAGACAATCTCGCGGAGCACCTTAGGGCACATGCCGGCCaaataaagaagaagaagaagatctACAGCTGCGAGTTCTGCGGAAAACAATTCCAGGGCTATGCCCTGTTGAGTATCCATACGCGTACTCATACTGgCGAGAGGCCCTACCCGTGCGATTTGTGTCCTAAAAGATTCCCGTCCAGCGGAGCTATGAAAAAACACCGTCGTATGCATACCGGGGAAAAACCATACACCTGCGATCAGtGTGATAAAAAATTTGCTGCGAAAGAAACGTTGAACAGACATATGCGCACCCATACCGGAGTGAGGCCTCATCAGTGCCAATTCTGTGGGAAGTCCTTCATTCAGGCGTCTCAGTTGAGGGCCCACATCTTCCATCATACCGGGGAGAACGCGTATACTTGTCCGCATTGCAGTCGCGCTTTCAATAGAAAGCTAAGGCTCACCACCCACATTAAATTTATGCATGAGGGAGCCTTACCCCTGCCCTGTCCCCATTGCGATAAGACTTTCTTCAGGAAAGAGGATGTGGCCAGACATATGTACTCGCACAGTGGAGTAAAACGTAAGTATTTTAGGAACTAa
Protein Sequence: MEDSIVVIPLKTEANNVKAEKVQSVDNVPTENTETHTVVLQNVQLNDGEELPIIFNNFSQNDSDGNLEISTMEDEVIHTYIIQNTEYEHHEGQEEIIYEEQADGEDESVVQYVIEDQTEYEETADQVGEFEDESMVYAFEENEESVDNPPEEKEEEVEEEDVQDSDVKKEAELVECDICNKVFKTTAGLKRHITVNHGDNDNTEEEDPLTFQLCPCCGEPSDSAHTIGDFKCDQCDKLFVQQNCLDRHCSIEHPLNDKYVCAECKKSFNTKDLLIDHMRIHPLKSVKCLGCNREFTRKYHLDRHIGQTGCMGQPRKAFDCRVCKRFFTRKDNLAEHLRAHAGQIKKKKKIYSCEFCGKQFQGYALLSIHTRTHTGERPYPCDLCPKRFPSSGAMKKHRRMHTGEKPYTCDQCDKKFAAKETLNRHMRTHTGVRPHQCQFCGKSFIQASQLRAHIFHHTGENAYTCPHCSRAFNRKLRLTTHIKFMHEGALPLPCPHCDKTFFRKEDVARHMYSHSGVKRKYFRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -